Issue 369 rename output gaf and compress resulting merged file #130
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name: Run tests and QC | |
# Controls when the action will run. | |
on: | |
pull_request: | |
types: [ opened, synchronize, reopened ] | |
# Allows you to run this workflow manually from the Actions tab | |
workflow_dispatch: | |
types: trigger-run-tests | |
# A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
jobs: | |
# This workflow contains a single job called "build" | |
build: | |
# The type of runner that the job will run on | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python: [ "3.9", "3.10", "3.11", "3.12" ] | |
# Steps represent a sequence of tasks that will be executed as part of the job | |
steps: | |
- uses: actions/[email protected] | |
- uses: actions/setup-python@v2 | |
name: setup python environment | |
with: | |
python-version: ${{ matrix.python }} | |
- name: Install Poetry | |
uses: snok/[email protected] | |
- name: Install dependencies | |
run: poetry install --no-interaction | |
- name: Check common spelling errors | |
run: poetry run tox -e codespell | |
- name: Check code quality with ruff and black | |
run: poetry run tox -e lint | |
- name: Test with pytest and generate coverage file | |
run: poetry run tox -e py |