Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

GPAD documentation does not refer to how NOT should be or could be used #208

Open
dougli1sqrd opened this issue Feb 27, 2020 · 5 comments
Open

GPAD documentation does not refer to how NOT should be or could be used #208

dougli1sqrd opened this issue Feb 27, 2020 · 5 comments
Assignees
@suzialeksander

Comments

@dougli1sqrd
Copy link

NOT as a qualifier is not described in the GPAD document. This should be described in the documentation.
@dougli1sqrd
Copy link
Author

@cmungall Qualifier documentation in GPAD is confusing.

@pgaudet
Copy link
Collaborator

pgaudet commented Feb 27, 2020

@dougli1sqrd Where are you looking at GPAD doc?

@dougli1sqrd
Copy link
Author

http://geneontology.org/docs/gene-product-association-data-gpad-format/#qualifier

@suzialeksander
Copy link
Collaborator

http://wiki.geneontology.org/index.php/Annotation_conventions#Negation

We removed the qualifier talk so as to simplify the "front facing" public docs vs. curator docs, but yes, it would probably be nice to define the qualifiers on the main site.

@suzialeksander suzialeksander self-assigned this Mar 4, 2020
suzialeksander added a commit that referenced this issue Mar 30, 2020
@suzialeksander
Update go-annotations.md
a2e454c 
Adding underscores to qualifiers.  Adding line to tie NOT, c_t, c_w to GAF.  Still needs clarification on GPAD qualifiers #208
@suzialeksander suzialeksander mentioned this issue Mar 30, 2020
Merged
@lpalbou
Copy link
Contributor

lpalbou commented Jun 19, 2020

@suzialeksander is this ticket to be closed ? I see your PR was merged some time ago.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@suzialeksander suzialeksander

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
4 participants
@dougli1sqrd @pgaudet @suzialeksander @lpalbou