.gitignore

# Python-specific ignores
__pycache__/
*.py[cod]
*.pyo
*.pyd
*.so
*.egg
*.egg-info/
dist/
build/
*.log
*.tmp

# Virtual environment folders
env/
venv/
.venv/

# Jupyter notebooks checkpoints
.ipynb_checkpoints

# VS Code files
.vscode/
*.code-workspace

# PyCharm files
.idea/

# Ignore system files
.DS_Store
Thumbs.db

# Ignore data and downloads
filtered_zoonomia_dataset/
downloads/
seq_to_pheno/hug/__pycache__/
seq_to_pheno/longevity/downloads/
seq_to_pheno/longevity/fetch_sequences_zoonomiatonic.py
seq_to_pheno/longevity/data/zoonomia/protein_sequence_df/
seq_to_pheno/longevity/sequence_object/__pycache__/

# Ignore large files or specific logs
*.csv
*.tsv
*.json
*.h5
*.hdf5
*.db
*.sqlite3
*.pkl
*.pickle

# Ignore temporary and backup files
*.bak
*.swp
*.swo
*.tmp

# Ignore compressed files
*.zip
*.tar.gz
*.rar
*.7z
*.bz2

# Ignore output from specific scripts (if applicable)
output/
results/

# Ignore TensorBoard logs (if used)
logs/
events.out.tfevents.*