humanbody_test.py

"""
Mask R-CNN
Train on the toy Balloon dataset and implement color splash effect.

Copyright (c) 2018 Matterport, Inc.
Licensed under the MIT License (see LICENSE for details)
Written by Waleed Abdulla

------------------------------------------------------------

Usage: import the module (see Jupyter notebooks for examples), or run from
       the command line as such:

    # Train a new model starting from pre-trained COCO weights
    python3 balloon.py train --dataset=/path/to/balloon/dataset --weights=coco

    # Resume training a model that you had trained earlier
    python3 balloon.py train --dataset=/path/to/balloon/dataset --weights=last

    # Train a new model starting from ImageNet weights
    python3 balloon.py train --dataset=/path/to/balloon/dataset --weights=imagenet

    # Apply color splash to an image
    python3 balloon.py splash --weights=/path/to/weights/file.h5 --image=<URL or path to file>

    # Apply color splash to video using the last weights you trained
    python3 balloon.py splash --weights=last --video=<URL or path to file>
"""

import os
import sys
import json
import datetime
import numpy as np
import skimage.draw
import skimage.io
import matplotlib
import matplotlib.pyplot as plt
import random

# Root directory of the project
ROOT_DIR = os.path.abspath("../../")

# Import Mask RCNN
sys.path.append(ROOT_DIR)  # To find local version of the library
from mrcnn.config import Config
from mrcnn import model as modellib, utils
from mrcnn import visualize

# Path to trained weights file
COCO_WEIGHTS_PATH = os.path.join(ROOT_DIR, "mask_rcnn_coco.h5")

# Directory to save logs and model checkpoints, if not provided
# through the command line argument --logs
DEFAULT_LOGS_DIR = os.path.join(ROOT_DIR, "logs")

############################################################
#  Configurations
############################################################


class PersonConfig(Config):
    """Configuration for training on the toy  dataset.
    Derives from the base Config class and overrides some values.
    """
    # Give the configuration a recognizable name
    NAME = "humanbody"

    # We use a GPU with 12GB memory, which can fit two images.
    # Adjust down if you use a smaller GPU.
    IMAGES_PER_GPU = 2

    # Number of classes (including background)
    NUM_CLASSES = 1 + 1  # Background + person

    # Number of training steps per epoch
    STEPS_PER_EPOCH = 100

    # Skip detections with < 90% confidence
    DETECTION_MIN_CONFIDENCE = 0.9


############################################################
#  Dataset
############################################################

class PersonDataset(utils.Dataset):

    def load_person(self, dataset_dir, subset):
        """Load a subset of the Balloon dataset.
        dataset_dir: Root directory of the dataset.
        subset: Subset to load: train or val
        """
        # Add classes. We have only one class to add.
        self.add_class("person", 1, "person")

        # Train or validation dataset?
        assert subset in ["train", "val"]
        dataset_dir = os.path.join(dataset_dir, subset)

        # Load annotations
        # VGG Image Annotator (up to version 1.6) saves each image in the form:
        # { 'filename': '28503151_5b5b7ec140_b.jpg',
        #   'regions': {
        #       '0': {
        #           'region_attributes': {},
        #           'shape_attributes': {
        #               'all_points_x': [...],
        #               'all_points_y': [...],
        #               'name': 'polygon'}},
        #       ... more regions ...
        #   },
        #   'size': 100202
        # }
        # We mostly care about the x and y coordinates of each region
        # Note: In VIA 2.0, regions was changed from a dict to a list.
        annotations = json.load(open(os.path.join(dataset_dir, "via_region_data.json")))
        annotations = list(annotations.values())  # don't need the dict keys

        # The VIA tool saves images in the JSON even if they don't have any
        # annotations. Skip unannotated images.
        annotations = [a for a in annotations if a['regions']]

        # Add images
        for a in annotations:
            # Get the x, y coordinaets of points of the polygons that make up
            # the outline of each object instance. These are stores in the
            # shape_attributes (see json format above)
            # The if condition is needed to support VIA versions 1.x and 2.x.
            if type(a['regions']) is dict:
                polygons = [r['shape_attributes'] for r in a['regions'].values()]
            else:
                polygons = [r['shape_attributes'] for r in a['regions']] 

            # load_mask() needs the image size to convert polygons to masks.
            # Unfortunately, VIA doesn't include it in JSON, so we must read
            # the image. This is only managable since the dataset is tiny.
            image_path = os.path.join(dataset_dir, a['filename'])
            image = skimage.io.imread(image_path)
            height, width = image.shape[:2]

            self.add_image(
                "person",
                image_id=a['filename'],  # use file name as a unique image id
                path=image_path,
                width=width, height=height,
                polygons=polygons)

    def load_mask(self, image_id):
        """Generate instance masks for an image.
       Returns:
        masks: A bool array of shape [height, width, instance count] with
            one mask per instance.
        class_ids: a 1D array of class IDs of the instance masks.
        """
        # If not a balloon dataset image, delegate to parent class.
        image_info = self.image_info[image_id]
        if image_info["source"] != "person":
            return super(self.__class__, self).load_mask(image_id)

        # Convert polygons to a bitmap mask of shape
        # [height, width, instance_count]
        info = self.image_info[image_id]
        mask = np.zeros([info["height"], info["width"], len(info["polygons"])],
                        dtype=np.uint8)
        for i, p in enumerate(info["polygons"]):
            # Get indexes of pixels inside the polygon and set them to 1
            rr, cc = skimage.draw.polygon(p['all_points_y'], p['all_points_x'])
            mask[rr, cc, i] = 1

        # Return mask, and array of class IDs of each instance. Since we have
        # one class ID only, we return an array of 1s
        return mask.astype(np.bool), np.ones([mask.shape[-1]], dtype=np.int32)

    def image_reference(self, image_id):
        """Return the path of the image."""
        info = self.image_info[image_id]
        if info["source"] == "person":
            return info["path"]
        else:
            super(self.__class__, self).image_reference(image_id)


def train(model):
    """Train the model."""
    # Training dataset.
    dataset_train = PersonDataset()
    dataset_train.load_person(args.dataset, "train")
    dataset_train.prepare()

    # Validation dataset
    dataset_val = PersonDataset()
    dataset_val.load_person(args.dataset, "val")
    dataset_val.prepare()

    # *** This training schedule is an example. Update to your needs ***
    # Since we're using a very small dataset, and starting from
    # COCO trained weights, we don't need to train too long. Also,
    # no need to train all layers, just the heads should do it.
    print("Training network heads")
    model.train(dataset_train, dataset_val,
                learning_rate=config.LEARNING_RATE,
                epochs=30,
                layers='heads')
    # Fine tune all layers
    # Passing layers="all" trains all layers. You can also 
    # pass a regular expression to select which layers to
    # train by name pattern.
    model.train(dataset_train, dataset_val, 
            learning_rate=config.LEARNING_RATE / 10,
            epochs=10, 
            layers="all",augmentation=augmentation)


def color_splash(image, mask):
    """Apply color splash effect.
    image: RGB image [height, width, 3]
    mask: instance segmentation mask [height, width, instance count]

    Returns result image.
    """
    # Make a grayscale copy of the image. The grayscale copy still
    # has 3 RGB channels, though.
    gray = skimage.color.gray2rgb(skimage.color.rgb2gray(image)) * 255
    # Copy color pixels from the original color image where mask is set
    if mask.shape[-1] > 0:
        # We're treating all instances as one, so collapse the mask into one layer
        mask = (np.sum(mask, -1, keepdims=True) >= 1)
        splash = np.where(mask, image, gray).astype(np.uint8)
    else:
        splash = gray.astype(np.uint8)
    return splash


def detect_and_color_splash(model, image_path=None, video_path=None):
    assert image_path or video_path
    
    # Read dataset
    #dataset = PersonDataset()
    #dataset.load_person(dataset_dir, subset)
    #dataset.prepare()

    # Image or video?
    if image_path:
        # Run model detection and generate the color splash effect
        print("Running on {}".format(args.image))
        # Read image
        image = skimage.io.imread(args.image, as_grey=True)
        if image.ndim != 3:
            image = skimage.color.gray2rgb(image)
        #print(image.shape)
        # original image
        #plt.figure(figsize=(12,10))
        #skimage.io.imshow(image)
        # Detect objects
        r = model.detect([image], verbose=1)[0]
        # Visualize
        visualize.display_instances(image, r['rois'], r['masks'], r['class_ids'], "person", r['scores'])
        
        #plt.savefig("{}/{}.png".format(submit_dir, dataset.image_info[image_id]["id"]))

        # Color splash
        splash = color_splash(image, r['masks'])
        # Save output
        file_name = "splash_{:%Y%m%dT%H%M%S}.png".format(datetime.datetime.now())
        skimage.io.imsave(file_name, visualize.display_instances(image, r['rois'], r['masks'], r['class_ids'], "person", r['scores']))
    elif video_path:
        import cv2
        # Video capture
        vcapture = cv2.VideoCapture(video_path)
        width = int(vcapture.get(cv2.CAP_PROP_FRAME_WIDTH))
        height = int(vcapture.get(cv2.CAP_PROP_FRAME_HEIGHT))
        fps = vcapture.get(cv2.CAP_PROP_FPS)

        # Define codec and create video writer
        file_name = "splash_{:%Y%m%dT%H%M%S}.avi".format(datetime.datetime.now())
        vwriter = cv2.VideoWriter(file_name,
                                  cv2.VideoWriter_fourcc(*'MJPG'),
                                  fps, (width, height))

        count = 0
        success = True
        while success:
            print("frame: ", count)
            # Read next image
            success, image = vcapture.read()
            if success:
                # OpenCV returns images as BGR, convert to RGB
                image = image[..., ::-1]
                # Detect objects
                r = model.detect([image], verbose=0)[0]
                # Color splash
                #splash = color_splash(image, r['masks'])
                splash = visualize.display_instances(image, r['rois'], r['masks'], r['class_ids'], "person", r['scores'])
                # RGB -> BGR to save image to video
                splash = splash[..., ::-1]
                # Add image to video writer
                vwriter.write(splash)
                count += 1
        vwriter.release()
    print("Saved to ", file_name)


############################################################
#  Training
############################################################

if __name__ == '__main__':
    import argparse

    # Parse command line arguments
    parser = argparse.ArgumentParser(
        description='Train Mask R-CNN to detect persons.')
    parser.add_argument("command",
                        metavar="<command>",
                        help="'train' or 'splash'")
    parser.add_argument('--dataset', required=False,
                        metavar="/path/to/person/dataset/",
                        help='Directory of the Balloon dataset')
    parser.add_argument('--weights', required=True,
                        metavar="/path/to/weights.h5",
                        help="Path to weights .h5 file or 'coco'")
    parser.add_argument('--logs', required=False,
                        default=DEFAULT_LOGS_DIR,
                        metavar="/path/to/logs/",
                        help='Logs and checkpoints directory (default=logs/)')
    parser.add_argument('--image', required=False,
                        metavar="path or URL to image",
                        help='Image to apply the color splash effect on')
    parser.add_argument('--video', required=False,
                        metavar="path or URL to video",
                        help='Video to apply the color splash effect on')
    args = parser.parse_args()

    # Validate arguments
    if args.command == "train":
        assert args.dataset, "Argument --dataset is required for training"
    elif args.command == "splash":
        assert args.image or args.video,\
               "Provide --image or --video to apply color splash"

    print("Weights: ", args.weights)
    print("Dataset: ", args.dataset)
    print("Logs: ", args.logs)

    # Configurations
    if args.command == "train":
        config = PersonConfig()
    else:
        class InferenceConfig(PersonConfig):
            # Set batch size to 1 since we'll be running inference on
            # one image at a time. Batch size = GPU_COUNT * IMAGES_PER_GPU
            GPU_COUNT = 1
            IMAGES_PER_GPU = 1
        config = InferenceConfig()
    config.display()

    # Create model
    if args.command == "train":
        model = modellib.MaskRCNN(mode="training", config=config,
                                  model_dir=args.logs)
    else:
        model = modellib.MaskRCNN(mode="inference", config=config,
                                  model_dir=args.logs)

    
    # Select weights file to load
    if args.weights.lower() == "coco":
        weights_path = COCO_WEIGHTS_PATH
        # Download weights file
        if not os.path.exists(weights_path):
            utils.download_trained_weights(weights_path)
    elif args.weights.lower() == "last":
        # Find last trained weights
        weights_path = model.find_last()
    elif args.weights.lower() == "imagenet":
        # Start from ImageNet trained weights
        weights_path = model.get_imagenet_weights()
    else:
        weights_path = args.weights

    # Load weights
    print("Loading weights ", weights_path)
    if args.weights.lower() == "coco":
        # Exclude the last layers because they require a matching
        # number of classes, grayscale image excludes the first Conv layer
        model.load_weights(weights_path, by_name=True, exclude=[
            "mrcnn_class_logits", "mrcnn_bbox_fc",
            "mrcnn_bbox", "mrcnn_mask", "conv1"])
    else:
        model.load_weights(weights_path, by_name=True)

    # Train or evaluate
    if args.command == "train":
        train(model)
    elif args.command == "splash":
        detect_and_color_splash(model, image_path=args.image,
                                video_path=args.video)
    elif args.command == "test":        
        # Validation dataset
        dataset_val = PersonDataset()
        dataset_val.load_person('./humanbody', 'val')
        dataset_val.prepare()
        # Compute VOC-Style mAP @ IoU=0.5
        # Running on 10 images. Increase for better accuracy.
        image_ids = np.random.choice(dataset_val.image_ids, 200)
        APs = []
        count1 = 0
        '''for image_id in image_ids:
            # Load image and ground truth data
            image, image_meta, gt_class_id, gt_bbox, gt_mask =\
                modellib.load_image_gt(dataset_val, config,
                                       image_id, use_mini_mask=False)
                
            molded_images = np.expand_dims(modellib.mold_image(image, config), 0)       
            
            # Run object detection
            results = model.detect([image], verbose=0)
            r = results[0]
            # Compute AP
            AP, precisions, recalls, overlaps =\
                utils.compute_ap(gt_bbox, gt_class_id, gt_mask,
                                  r["rois"], r["class_ids"], r["scores"], r['masks'])
            APs.append(AP)  
            
            recall = utils.compute_recall(r["rois"], gt_bbox, 0.5)
            print(recall)      

        print("mAP: ", np.mean(APs))

        # Draw pr curve       
        #plt.plot(Recalls, Precisions, 'b', label='PR')
        plt.title('precision-recall curve')
        plt.xlabel('Recall')
        plt.ylabel('Precision')
        plt.legend()
        plt.show()'''
        
        # Traverse the test set
        for image_id in image_ids:
                 # Load the ground truth of the test set
            image, image_meta, gt_class_id, gt_bbox, gt_mask = \
                modellib.load_image_gt(dataset_val, config,
                               image_id, use_mini_mask=False)
                 # Load and save all ground truth
            if count1 == 0:
                save_box, save_class, save_mask = gt_bbox, gt_class_id, gt_mask
            else:
                save_box = np.concatenate((save_box, gt_bbox), axis=0)
                save_class = np.concatenate((save_class, gt_class_id), axis=0)
                save_mask = np.concatenate((save_mask, gt_mask), axis=2)
 
            molded_images = np.expand_dims(modellib.mold_image(image, config), 0)
 
                 # Start detection
            results = model.detect([image], verbose=0)
            r = results[0]
 
                 # Save all test results
            if count1 == 0:
                save_roi, save_id, save_score, save_m = r["rois"], r["class_ids"], r["scores"], r['masks']
            else:
                save_roi = np.concatenate((save_roi, r["rois"]), axis=0)
                save_id = np.concatenate((save_id, r["class_ids"]), axis=0)
                save_score = np.concatenate((save_score, r["scores"]), axis=0)
                save_m = np.concatenate((save_m, r['masks']), axis=2)
 
            count1 += 1
 
         # Calculate AP, precision, recall
        AP, precisions, recalls, overlaps = \
        utils.compute_ap(save_box, save_class, save_mask,
                         save_roi, save_id, save_score, save_m)
 
        print("AP: ", AP)
        print("mAP: ", np.mean(AP))
        
        ap = utils.compute_ap_range(save_box, save_class, save_mask,
                         save_roi, save_id, save_score, save_m)
        print(ap)
 
         # Draw PR curve
        plt.plot(recalls, precisions, 'b', label='PRcurve')
        plt.title('precision-recall curve')
        plt.xlabel('Recall')
        plt.ylabel('Precision')
        plt.legend()
        plt.show()


        
    else:
        print("'{}' is not recognized. "
              "Use 'train' or 'splash'".format(args.command))