I apply mass spectrometry based methods (metabolomics, lipidomics, proteomics) to unravel molecular characteristics of solid tumors and their microenvinronment. To achieve this, I establish robust and quality controlled experimental and computational workflows. See below some of my tools and training materials mainly based on the Galaxy framework, which enables open science and accessible research.
- Cardinal software suite
- Galaxy tools in GitHub
- Direct links to use the tools on the European Galaxy server:
- MALDIquant software suite
- Galaxy tools in GitHub
- Direct links to use the tools on the European Galaxy server:
- MSstats
- Galaxy tools in GitHub
- Direct links to use the tool on the European Galaxy server:
- PyProphet software suite
- Galaxy tools in GitHub
- Direct links to use the tools on the European Galaxy server:
- Diapysef
- Galaxy tools in GitHub
- Direct links to use the tool on the European Galaxy server:
- March 2023: Introduction to Metabolomics
- May 2023: Global Galaxy online course (GTN Smörgasboard 3)
- Overview of my Galaxy training materials
- Video "Proteomics - Introduction to mass spectrometry based proteomics data analysis"
- October 2022: ABRF Proteomics Cloud Computing Workshops
- August 2022: Galaxy-P workshop at IMSC 2022
- March 2022: Global Galaxy online course (GTN Smörgasboard 2)
- ASMSM 2020 Fall Workshop: R R Fundamentals and Best Practices for Mass Spectrometry Data Analysis: