adjust python lint paths and fix pre-commit issue

.github/workflows/install_and_test.yml

@@ -37,39 +37,28 @@ jobs:
         python-version: '3.9.16'
     - name: setup
       run: |-
-        pip install -U pip
-        pip install -U --prefer-binary \
-          black==23.1.0 \
-          flake8 \
-          flake8-bugbear==22.6.22 \
-          flake8-builtins \
-          flake8-comprehensions \
-          flake8-return \
-          flake8-simplify \
-          hypothesis==6.29.3 \
-          isort==5.12.0 \
-          mypy \
-          numpy==1.26.4 \
-          pytest \
-          sphinx \
-          tqdm
-        pip install --prefer-binary -r requirements.txt torch --progress-bar off
+        pip install black==23.1.0 --progress-bar off
+        pip install "isort[pyproject]" numpy --progress-bar off
+        pip install mypy==0.991 types-mock types-Pillow types-tqdm types-PyYAML --progress-bar off
+        pip install -r habitat-lab/requirements.txt --progress-bar off
     - name: run black
       run: |-
         black --version
-        black --exclude '/(\.eggs|\.git|\.hg|\.mypy_cache|\.nox|\.tox|\.venv|_build|buck-out|build|dist)|examples/tutorials/(notebooks|nb_python)'  src_python/habitat_sim/. examples/. tests/. setup.py --diff
-        black --exclude '/(\.eggs|\.git|\.hg|\.mypy_cache|\.nox|\.tox|\.venv|_build|buck-out|build|dist)|examples/tutorials/(notebooks|nb_python)'  src_python/habitat_sim/. examples/. tests/. setup.py --check
+        black --exclude '/(\.eggs|\.git|\.hg|\.mypy_cache|\.nox|\.tox|\.venv|_build|buck-out|build|dist)|examples/tutorials/(notebooks|nb_python)' habitat-lab/. habitat-baselines/. examples/. test/. --diff
+        black --exclude '/(\.eggs|\.git|\.hg|\.mypy_cache|\.nox|\.tox|\.venv|_build|buck-out|build|dist)|examples/tutorials/(notebooks|nb_python)' habitat-lab/. habitat-baselines/. examples/. test/. --check
     - name: run isort
       run: |-
         isort --version
-        isort src_python/habitat_sim/. examples/. tests/. setup.py --diff
-        isort src_python/habitat_sim/. examples/. tests/. setup.py --check-only
+        isort habitat-lab/. habitat-baselines/. examples/. test/.  --diff
+        isort habitat-lab/. habitat-baselines/. examples/. test/.  --check-only
     - name: run flake8
       run: |-
         flake8 --version
         flake8 src_python/habitat_sim/. examples/. tests/. setup.py
     - name: run mypy
-      run: mypy
+      run: |-
+        mypy --version
+        mypy --exclude="^docs/|setup.py$"
 
   install_and_test_lab_ubuntu:
     runs-on: 4-core-ubuntu-gpu-t4
@@ -235,4 +224,5 @@ jobs:
         python -c 'import habitat_baselines; print("habitat_baselines version:", habitat_baselines.__version__)'
     #NOTE: use the below to debug with ssh: simply move this "job" just before the crashing job to intercept the workflow
     #- name: Debugging with tmate
-    #  uses: mxschmitt/[email protected]
+    #  uses: mxschmitt/[email protected]
+