ACTIN-Report generates a PDF based on all data fed into ACTIN and generated by ACTIN-Algo. An example PDF can be found here
This application requires Java 11+ and can be run as follows:
java -cp actin.jar com.hartwig.actin.report.ReporterApplication \
-clinical_json /path/to/clinical.json \
-molecular_json /path/to/molecular.json \
-treatment_match_json /path/to/treatment_match.json \
-output_directory /path/where/pdf/is/written \
The following assumptions are made about the inputs:
- The clinical JSON adheres to the format that is generated by ACTIN-Clinical.
- The molecular JSON adheres to the format that is generated by ACTIN-Molecular
- The treatment match JSON is the output generated by ACTIN-Algo
Optionally, the flag -skip_trial_matching_details can be provided in which case the trial matching details chapter will be omitted.
- Upcoming (first release)