Skip to content
Indigo CI

#1277 SMILES with bad stereochemistry is not parsed #2851

Sign in to view logs

#1277 SMILES with bad stereochemistry is not parsed

#1277 SMILES with bad stereochemistry is not parsed #2851

Triggered via pull request September 15, 2023 09:37
@even1024even1024
synchronize #1280
1277-bad-stereochemistry-smiles
Status Failure
Total duration 46m 1s
Artifacts 36

indigo-ci.yaml

on: pull_request
static_analysis
2m 47s
static_analysis
Matrix: build_indigo_libs_aarch64
Matrix: build_indigo_libs_i386
Matrix: build_indigo_libs_x86_64
build_indigo_ketcher
17m 53s
build_indigo_ketcher
build_indigo_windows_mingw_x86_64
20m 1s
build_indigo_windows_mingw_x86_64
build_indigo_ketcher_cjk
23m 7s
build_indigo_ketcher_cjk
build_bingo_oracle_linux_x86_64
4m 25s
build_bingo_oracle_linux_x86_64
build_bingo_oracle_windows_mingw_x86_64
11m 57s
build_bingo_oracle_windows_mingw_x86_64
build_bingo_oracle_windows_msvc_x86_64
8m 21s
build_bingo_oracle_windows_msvc_x86_64
Matrix: build_bingo_postgres_linux_x86_64
Matrix: build_bingo_postgres_macos_x86_64
Matrix: build_bingo_postgres_windows_msvc_x86_64
Matrix: build_bingo_sqlserver_windows_msvc_x86_64
Matrix: build_indigo_utils_x86_64
Matrix: build_indigo_wrappers
Matrix: test_bingo_elastic_java_linux_x86_64
Matrix: test_bingo_elastic_python_linux_x86_64
Matrix: test_indigo_dotnet_i386
Matrix: test_indigo_dotnet_x86_64
Matrix: test_indigo_java_aarch64
Matrix: test_indigo_java_i386
Matrix: test_indigo_java_x86_64
Matrix: test_indigo_python_aarch64
Matrix: test_indigo_python_i386
Matrix: test_indigo_python_x86_64
build_test_publish_indigo_service_old
1m 56s
build_test_publish_indigo_service_old
build_test_publish_indigo_service_new
48s
build_test_publish_indigo_service_new
publish_indigo_to_pypi
0s
publish_indigo_to_pypi
publish_indigo_to_nuget
0s
publish_indigo_to_nuget
publish_indigo_to_npm
0s
publish_indigo_to_npm
publish_indigo_to_maven
0s
publish_indigo_to_maven
Fit to window
Zoom out
Zoom in

Annotations

63 errors and 19 warnings
basic.fold_unfold: api/c/tests/unit/tests/basic.cpp#L1
[FAILED]
basic.stereocenters: api/c/tests/unit/tests/basic.cpp#L1
[FAILED]
exact.reload: exact#L1
[ERROR]
inchi.compare: api/c/tests/unit/tests/inchi.cpp#L1
[FAILED]
rpe.transform_basic: api/tests/integration/ref/rpe/rpe.py.out#L1
[FAILED]
stereo.bidirectional: api/tests/integration/tests/basic/molecules/stereo.mol#L1
[FAILED]
test_indigo_dotnet_x86_64 (ubuntu)
Process completed with exit code 3.
basic.fold_unfold: api/c/tests/unit/tests/basic.cpp#L1
[FAILED]
basic.stereocenters: api/c/tests/unit/tests/basic.cpp#L1
[FAILED]
exact.reload: exact#L1
[ERROR]
inchi.compare: api/c/tests/unit/tests/inchi.cpp#L1
[FAILED]
rpe.transform_basic: api/tests/integration/ref/rpe/rpe.py.out#L1
[FAILED]
stereo.bidirectional: api/tests/integration/tests/basic/molecules/stereo.mol#L1
[FAILED]
test_indigo_python_x86_64 (macos)
Process completed with exit code 3.
basic.fold_unfold: api/c/tests/unit/tests/basic.cpp#L1
[FAILED]
basic.stereocenters: api/c/tests/unit/tests/basic.cpp#L1
[FAILED]
exact.reload: exact#L1
[ERROR]
inchi.compare: api/c/tests/unit/tests/inchi.cpp#L1
[FAILED]
rpe.transform_basic: api/tests/integration/ref/rpe/rpe.py.out#L1
[FAILED]
stereo.bidirectional: api/tests/integration/tests/basic/molecules/stereo.mol#L1
[FAILED]
test_indigo_python_x86_64 (ubuntu)
Process completed with exit code 3.
basic.fold_unfold: api/c/tests/unit/tests/basic.cpp#L1
[FAILED]
basic.stereocenters: api/c/tests/unit/tests/basic.cpp#L1
[FAILED]
exact.reload: exact#L1
[ERROR]
inchi.compare: api/c/tests/unit/tests/inchi.cpp#L1
[FAILED]
rpe.transform_basic: api/tests/integration/ref/rpe/rpe.py.out#L1
[FAILED]
stereo.bidirectional: api/tests/integration/tests/basic/molecules/stereo.mol#L1
[FAILED]
test_indigo_java_x86_64 (ubuntu)
Process completed with exit code 3.
basic.fold_unfold: api/c/tests/unit/tests/basic.cpp#L1
[FAILED]
basic.stereocenters: api/c/tests/unit/tests/basic.cpp#L1
[FAILED]
exact.reload: exact#L1
[ERROR]
inchi.compare: api/c/tests/unit/tests/inchi.cpp#L1
[FAILED]
rpe.transform_basic: api/tests/integration/ref/rpe/rpe.py.out#L1
[FAILED]
stereo.bidirectional: api/tests/integration/tests/basic/molecules/stereo.mol#L1
[FAILED]
test_indigo_java_x86_64 (macos)
Process completed with exit code 3.
basic.fold_unfold: api/c/tests/unit/tests/basic.cpp#L1
[FAILED]
basic.stereocenters: api/c/tests/unit/tests/basic.cpp#L1
[FAILED]
exact.reload: exact#L1
[ERROR]
inchi.compare: api/c/tests/unit/tests/inchi.cpp#L1
[FAILED]
rpe.transform_basic: api/tests/integration/ref/rpe/rpe.py.out#L1
[FAILED]
stereo.bidirectional: api/tests/integration/tests/basic/molecules/stereo.mol#L1
[FAILED]
test_indigo_dotnet_x86_64 (macos)
Process completed with exit code 3.
basic.fold_unfold: api\c\tests\unit\tests\basic.cpp#L1
[FAILED]
basic.stereocenters: api\c\tests\unit\tests\basic.cpp#L1
[FAILED]
exact.reload: exact#L1
[ERROR]
inchi.compare: api\c\tests\unit\tests\inchi.cpp#L1
[FAILED]
rpe.transform_basic: api\tests\integration\ref\rpe\rpe.py.out#L1
[FAILED]
stereo.bidirectional: api\tests\integration\tests\basic\molecules\stereo.mol#L1
[FAILED]
test_indigo_python_x86_64 (windows)
Process completed with exit code 1.
basic.fold_unfold: api\c\tests\unit\tests\basic.cpp#L1
[FAILED]
basic.stereocenters: api\c\tests\unit\tests\basic.cpp#L1
[FAILED]
exact.reload: exact#L1
[ERROR]
inchi.compare: api\c\tests\unit\tests\inchi.cpp#L1
[FAILED]
rpe.transform_basic: api\tests\integration\ref\rpe\rpe.py.out#L1
[FAILED]
stereo.bidirectional: api\tests\integration\tests\basic\molecules\stereo.mol#L1
[FAILED]
test_indigo_java_x86_64 (windows)
Process completed with exit code 1.
basic.fold_unfold: api\c\tests\unit\tests\basic.cpp#L1
[FAILED]
basic.stereocenters: api\c\tests\unit\tests\basic.cpp#L1
[FAILED]
exact.reload: exact#L1
[ERROR]
inchi.compare: api\c\tests\unit\tests\inchi.cpp#L1
[FAILED]
rpe.transform_basic: api\tests\integration\ref\rpe\rpe.py.out#L1
[FAILED]
stereo.bidirectional: api\tests\integration\tests\basic\molecules\stereo.mol#L1
[FAILED]
test_indigo_dotnet_x86_64 (windows)
Process completed with exit code 1.
build_bingo_postgres_linux_x86_64 (12)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_bingo_postgres_linux_x86_64 (14)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_bingo_postgres_linux_x86_64 (13)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_bingo_postgres_linux_x86_64 (15)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_bingo_postgres_linux_x86_64 (11)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_indigo_ketcher
The following actions uses node12 which is deprecated and will be forced to run on node16: mymindstorm/setup-emsdk@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_indigo_java_i386 (windows)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_bingo_elastic_python_linux_x86_64 (3.7)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_bingo_elastic_python_linux_x86_64 (3.7)
Unexpected input(s) 'lfs', 'fetch-depth', valid inputs are ['python-version', 'cache', 'architecture', 'token', 'cache-dependency-path']
test_bingo_elastic_python_linux_x86_64 (3.7)
Unexpected input(s) 'lfs', 'fetch-depth', valid inputs are ['python-version', 'cache', 'architecture', 'token', 'cache-dependency-path']
test_bingo_elastic_python_linux_x86_64 (3.10)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_bingo_elastic_python_linux_x86_64 (3.10)
Unexpected input(s) 'lfs', 'fetch-depth', valid inputs are ['python-version', 'cache', 'architecture', 'token', 'cache-dependency-path']
test_bingo_elastic_python_linux_x86_64 (3.10)
Unexpected input(s) 'lfs', 'fetch-depth', valid inputs are ['python-version', 'cache', 'architecture', 'token', 'cache-dependency-path']
test_indigo_python_i386 (windows)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_indigo_python_aarch64 (ubuntu)
The following actions uses node12 which is deprecated and will be forced to run on node16: uraimo/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_indigo_ketcher_cjk
The following actions uses node12 which is deprecated and will be forced to run on node16: mymindstorm/setup-emsdk@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_bingo_elastic_java_linux_x86_64 (1.11)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_indigo_java_aarch64 (ubuntu)
The following actions uses node12 which is deprecated and will be forced to run on node16: uraimo/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_bingo_elastic_java_linux_x86_64 (1.8)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Artifacts

Produced during runtime
Name Size
bingo-elastic-python Expired
33.6 MB
bingo-oracle-linux-x86_64 Expired
3.69 MB
bingo-oracle-windows-mingw-x86_64 Expired
3.78 MB
bingo-oracle-windows-msvc-x86_64 Expired
2.05 MB
bingo-postgres-11-linux-x86_64 Expired
3.72 MB
bingo-postgres-11-macos-x86_64 Expired
2.69 MB
bingo-postgres-11-windows-x86_64 Expired
2.02 MB
bingo-postgres-12-linux-x86_64 Expired
3.72 MB
bingo-postgres-12-macos-x86_64 Expired
2.69 MB
bingo-postgres-12-windows-x86_64 Expired
2.02 MB
bingo-postgres-13-linux-x86_64 Expired
3.72 MB
bingo-postgres-13-macos-x86_64 Expired
2.69 MB
bingo-postgres-13-windows-x86_64 Expired
2.02 MB
bingo-postgres-14-linux-x86_64 Expired
3.72 MB
bingo-postgres-14-macos-x86_64 Expired
2.69 MB
bingo-postgres-14-windows-x86_64 Expired
2.02 MB
bingo-postgres-15-linux-x86_64 Expired
3.72 MB
bingo-postgres-15-macos-x86_64 Expired
2.69 MB
bingo-postgres-15-windows-x86_64 Expired
2.02 MB
bingo-sqlserver-windows-x86_64 Expired
1.98 MB
indigo-dotnet Expired
33.4 MB
indigo-java Expired
67.1 MB
indigo-ketcher Expired
3.68 MB
indigo-ketcher-cjk Expired
20.1 MB
indigo-libs-linux-aarch64 Expired
16.8 MB
indigo-libs-linux-x86_64 Expired
17.9 MB
indigo-libs-macos-aarch64 Expired
10.7 MB
indigo-libs-macos-x86_64 Expired
11.4 MB
indigo-libs-windows-i386 Expired
13.1 MB
indigo-libs-windows-mingw-x86_64 Expired
72.6 MB
indigo-libs-windows-x86_64 Expired
13.9 MB
indigo-native-shared-libs Expired
83.8 MB
indigo-python Expired
33.6 MB
indigo-utils-linux-x86_64 Expired
30.3 MB
indigo-utils-macos-x86_64 Expired
26.1 MB
indigo-utils-windows-x86_64 Expired
17.2 MB