Python 3 stable
Reference release of ContaVect in Python 3.
Runs in Singularity container or Conda environment.
Notable changes
Minor inconsistencies with the former Python 2 version .bed and .bed_graph outputs are expected.
Those are due to the pysam dependency update.
Dependencies versions
- Python: 3.10+
- BWA: 0.7.17-r1188
- Samtools: 1.11
- BLAST: 2.11.0
- pySAM: 0.17.0
- Matplotlib: 3.4.3
- Biopython: 1.79