diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
deleted file mode 100644
index 177567f..0000000
--- a/.github/workflows/ci.yml
+++ /dev/null
@@ -1,60 +0,0 @@
-name: GitHub CI/CD Workflow	
-
-on: [push, pull_request]	
-
-jobs:	
-  build:	
-
-    runs-on: ubuntu-latest	
-    container:	
-      image: ubuntu:24.04	
-    env:	
-      OPENSSL_DIR: /usr/include/openssl	
-      OPENSSL_LIB_DIR: /usr/lib/x86_64-linux-gnu	
-      OPENSSL_INCLUDE_DIR: /usr/include/openssl	
-
-    steps:	
-    - name: Install dependencies	
-      run: |	
-        apt-get update	
-        apt-get install -y curl git build-essential libssl-dev 	
-        
-    - uses: actions/checkout@v4 # checkout the repository	
-    - name: Install Rust	
-      run: |
-        curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y
-        echo "$HOME/.cargo/bin" >> $GITHUB_PATH
-
-    - name: Set up JDK 11 # required for build-models.sh	
-      uses: actions/setup-java@v3
-      with:	
-        distribution: 'adopt'	
-        java-version: '11'	
-
-    - name: Install Go	
-      uses: actions/setup-go@v4
-      with:	
-        go-version: '^1.22'  	
-    - name: Install Funnel	
-      run: |	
-          if [ -d "funnel" ]; then rm -Rf funnel; fi	
-          git clone https://github.com/ohsu-comp-bio/funnel.git	
-          cd funnel && make && make install && cd ..	
-    - uses: actions/checkout@v4 # checkout the repository	
-    - name: Build models	
-      run: |	
-        bash ./build-models.sh	
-    - name: Build	
-      run: |	
-        cargo build --verbose	
-    - name: Run tests	
-      run: |	
-        bash ./run-tests.sh	
-    - name: Lint	
-      run: |	
-        cargo clippy -- -D warnings	
-    - name: Format	
-      run: |	
-        cargo fmt -- ./lib/src/serviceinfo/models/*.rs # workaround to fix autogenerated code formatting	
-        cargo fmt -- ./lib/src/tes/models/*.rs	
-        cargo fmt -- --check
\ No newline at end of file
diff --git a/.github/workflows/code_quality.yaml b/.github/workflows/code_quality.yaml
new file mode 100644
index 0000000..955488d
--- /dev/null
+++ b/.github/workflows/code_quality.yaml
@@ -0,0 +1,64 @@
+---
+name: Code test
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  format:
+    name: Running formating checks
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Install rust toolchain
+        uses: actions-rust-lang/setup-rust-toolchain@v1
+        with:
+          toolchain: stable
+          components: fmt
+
+      - name: Run fmt checks
+        run: |
+          cargo fmt -- --check
+
+  lint:
+    name: Running lint checks
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Install rust toolchain
+        uses: actions-rust-lang/setup-rust-toolchain@v1
+        with:
+          toolchain: stable
+          components: clippy
+
+      - name: Run unit tests
+        run: |	
+          cargo clippy -- -D warnings	
+
+  spell-check:
+    name: Running spell check
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Setup Node.js
+        uses: actions/setup-node@v4
+        with:
+          node-version: '20.9.0'
+
+      - name: Install cspell
+        run: npm install -g cspell
+
+      - name: Spell check
+        run: cspell "**/*"
+...
diff --git a/.github/workflows/code_test.yaml b/.github/workflows/code_test.yaml
new file mode 100644
index 0000000..c0ad90e
--- /dev/null
+++ b/.github/workflows/code_test.yaml
@@ -0,0 +1,101 @@
+---
+name: Code test
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  common-steps:
+    name: common setup steps
+    runs-on: ubuntu-latest
+    outputs:
+      rust-toolchain: ${{ steps.set-toolchain.outputs.version }}
+    steps:
+      - name: Stop existing Funnel container if running
+        run: |
+          docker stop $(docker ps -q --filter ancestor=ohsucompbio/funnel:latest) || true
+        shell: bash
+
+      - name: Start Funnel
+        run: |
+          docker run -d -p 8000:8000 ohsucompbio/funnel:latest \
+          server run --Server.HostName=localhost --Server.HTTPPort=8000
+        shell: bash
+
+      - name: Wait for Funnel to be healthy
+        run: |
+          until curl --fail http://localhost:8000/v1/tasks; do
+            echo "Waiting for Funnel to be healthy..."
+            sleep 3
+          done
+        shell: bash
+
+  integration-tests:
+    name: Run integration tests
+    runs-on: ubuntu-latest
+    needs: common-steps
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Install rust toolchain
+        uses: actions-rust-lang/setup-rust-toolchain@v1
+        with:
+          toolchain: stable
+
+      - name: Run integration tests
+        run: cargo test --tests
+
+      - name: Install cargo-tarpaulin
+        run: cargo install cargo-tarpaulin
+
+      - name: Run unit tests with coverage
+        run: cargo tarpaulin --tests --doc --out Xml
+
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v4
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          files: ./tarpaulin-report.xml
+          flags: test_integration
+          name: codecov-umbrella
+          fail_ci_if_error: true
+          verbose: true
+
+  unit-tests:
+    name: Run unit tests
+    runs-on: ubuntu-latest
+    needs: common-steps
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Install rust toolchain
+        uses: actions-rust-lang/setup-rust-toolchain@v1
+        with:
+          toolchain: stable
+
+      - name: Run unit tests
+        run: cargo test --lib
+
+      - name: Install cargo-tarpaulin
+        run: cargo install cargo-tarpaulin
+
+      - name: Run unit tests with coverage
+        run: cargo tarpaulin --tests --doc --out Xml
+
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v3
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          files: ./tarpaulin-report.xml
+          flags: test_unit
+          name: codecov-umbrella
+          fail_ci_if_error: true
+          verbose: true
+...
diff --git a/.github/workflows/local.yml b/.github/workflows/local.yml
deleted file mode 100644
index d0b039f..0000000
--- a/.github/workflows/local.yml
+++ /dev/null
@@ -1,98 +0,0 @@
-name: Local CI/CD Workflow	
-
-on: workflow_dispatch
-
-jobs:	
-  build:	
-
-    runs-on: ubuntu-latest	
-    container:	
-      image: ubuntu:24.04	
-    env:	
-      OPENSSL_DIR: /usr/include/openssl	
-      OPENSSL_LIB_DIR: /usr/lib/x86_64-linux-gnu	
-      OPENSSL_INCLUDE_DIR: /usr/include/openssl	
-
-    steps:	
-
-    - name: Cache Rust dependencies	
-      uses: actions/cache@v3
-      with:	
-        path: ~/.cargo	
-        key: ${{ runner.os }}-cargo-${{ hashFiles('**/Cargo.lock') }}	
-        restore-keys: ${{ runner.os }}-cargo-	
-
-    - name: Cache Rust build output	
-      uses: actions/cache@v3
-      with:	
-        path: target	
-        key: ${{ runner.os }}-build-${{ hashFiles('**/Cargo.lock') }}	
-        restore-keys: ${{ runner.os }}-build-		
-
-    - name: Cache Maven dependencies	
-      uses: actions/cache@v3
-      with:	
-        path: ~/.m2/repository	
-        key: ${{ runner.os }}-maven-${{ hashFiles('**/pom.xml') }}	
-        restore-keys: ${{ runner.os }}-maven-	
-
-    - name: Cache Go modules	
-      uses: actions/cache@v3
-      with:	
-        path: ~/.cache/go-build	
-        key: ${{ runner.os }}-go-${{ hashFiles('**/go.sum') }}	
-        restore-keys: ${{ runner.os }}-go-	
-
-    - name: Cache Funnel dependencies	
-      uses: actions/cache@v3
-      with:	
-        path: ~/funnel/build	
-        key: ${{ runner.os }}-funnel-${{ hashFiles('**/funnel/*') }}	
-        restore-keys: ${{ runner.os }}-funnel-	
- 
-    - uses: actions/checkout@v4 # checkout the repository	
-    - name: Install Rust	
-      run: |
-        curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y
-        echo "$HOME/.cargo/bin" >> $GITHUB_PATH
-
-    - name: Set up JDK 11 # required for build-models.sh	
-      uses: actions/setup-java@v3
-      with:	
-        distribution: 'adopt'	
-        java-version: '11'	
-
-    - name: Install Go	
-      uses: actions/setup-go@v4
-      with:	
-        go-version: '^1.22'  	
-    - name: Install Funnel	
-      run: |	
-          if [ -d "funnel" ]; then rm -Rf funnel; fi	
-          git clone https://github.com/ohsu-comp-bio/funnel.git	
-          cd funnel && make && make install && cd ..	
-    - uses: actions/checkout@v4 # checkout the repository	
-    - name: Build models	
-      run: |	
-        . $HOME/.cargo/env	
-        bash ./build-models.sh	
-    - name: Build	
-      run: |	
-        . $HOME/.cargo/env	
-        cargo build --verbose	
-    - name: Run tests	
-      run: |	
-        . $HOME/.cargo/env	
-        bash ./run-tests.sh	
-    - name: Lint	
-      run: |	
-        . $HOME/.cargo/env	
-        cargo clippy -- -D warnings	
-    - name: Format	
-      run: |	
-        . $HOME/.cargo/env	
-        # rustup install nightly – fails for some reason	
-        # rustup default nightly	
-        cargo fmt -- ./lib/src/serviceinfo/models/*.rs # workaround to fix autogenerated code formatting	
-        cargo fmt -- ./lib/src/tes/models/*.rs	
-        cargo fmt -- --check # --config-path ./rustfmt.toml	
\ No newline at end of file
diff --git a/.github/workflows/pr_evaluation.yaml b/.github/workflows/pr_evaluation.yaml
new file mode 100644
index 0000000..757cf1e
--- /dev/null
+++ b/.github/workflows/pr_evaluation.yaml
@@ -0,0 +1,81 @@
+---
+name: PR evaluation
+
+on:
+  pull_request:
+    types: [opened, synchronize, reopened, ready_for_review, edited]
+    branches: ['main']
+
+jobs:
+  detect-unresolved-conflicts:
+    name: Detect unresolved merge conflicts
+    runs-on: ubuntu-latest
+    needs: semantic_pr
+    steps:
+      - uses: actions/checkout@v3
+      - name: List files with merge conflict markers
+        run: git --no-pager grep "<<<<<<<" ":(exclude).github/" || true
+      - name: Fail or succeed job if any files with merge conflict markers
+        run: exit $(git grep "<<<<<<<" ":(exclude).github/" | wc --lines)
+
+  pre-commit:
+    name: Pre-commit checks
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Check all the pre-commit hooks passed
+        run: pre-commit run --all-files
+
+  semantic-pr:
+    name: Semantic PR title
+    runs-on: ubuntu-latest
+    if: ${{ github.event.action != 'edited' ||
+            github.event.changes.title != null }}
+    steps:
+      - name: Check if the PR title is semantic
+        uses: amannn/action-semantic-pull-request@v5
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        with:
+          types: |
+            fix
+            feat
+            docs
+            style
+            refactor
+            perf
+            test
+            build
+            ci
+            chore
+            revert
+          subjectPattern: ^(?![A-Z])(?=.{1,50}$).+$
+          subjectPatternError: |
+            The subject "{subject}" found in the pull request title "{title}"
+            didn't match the configured pattern. Please ensure that the subject
+            doesn't start with an uppercase character & not have more than 50
+            characters.
+
+      - name: Check length of PR title
+        run: |
+          PR_TITLE="${{ github.event.pull_request.title }}"
+          if [ ${#PR_TITLE} -gt 50 ]; then
+            echo "The PR title is too long. Please keep it under 50 characters."
+            exit 1
+          fi
+
+  binary-build:
+    name: Check if binary builds without error
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Install rust toolchain
+        uses: actions-rust-lang/setup-rust-toolchain@v1
+
+      - name: Build the binary
+        run: cargo build --release
+...
diff --git a/.markdownlint.yaml b/.markdownlint.yaml
new file mode 100644
index 0000000..9d9ffa1
--- /dev/null
+++ b/.markdownlint.yaml
@@ -0,0 +1,74 @@
+---
+default: true
+
+# Headings
+MD001: 
+  level: 1  # Require headings to increment by one level at a time
+MD002: 
+  level: 2  # Require that the first heading in a document is a level 2 heading
+MD003: 
+  style: atx  # Enforce a consistent style for headings (e.g., atx style using #)
+
+# Unordered Lists
+MD004: 
+  style: dash  # Enforce consistent marker style (e.g., - for list items)
+MD005: true  # Ensure list indentation is consistent
+MD006: true  # Require proper indentation for list items
+MD007: 
+  indent: 2  # Enforce a consistent indentation level for nested list items
+
+# Line Length
+MD013: 
+  line_length: 80  # Limit line length to 80 characters
+  code_blocks: false  # Exclude code blocks from line length rule
+  tables: false  # Exclude tables from line length rule
+
+# Trailing Spaces
+MD009: 
+  strict: true  # Ensure no trailing spaces at the end of lines
+
+# Punctuation
+MD026: 
+  punctuation: ".,;:!"  # Ensure proper punctuation in headings
+
+# Horizontal Rules
+MD035: 
+  style: "***"  # Enforce a consistent style for horizontal rules
+
+# Links and Images
+MD042: true  # Require proper use of URLs in links
+MD045: true  # Ensure alt text is provided for images
+
+# General Formatting
+MD010: true  # No hard tabs
+MD012: 
+  maximum: 1  # No multiple consecutive blank lines
+MD014: true  # Dollar signs used before commands without showing output
+MD018: true  # No space after hash on atx style heading
+MD019: true  # Multiple spaces after hash on atx style heading
+MD020: true  # No space inside hashes on closed atx style heading
+MD021: true  # No multiple spaces inside hashes on closed atx style heading
+MD022: true  # Headings should be surrounded by blank lines
+MD023: true  # Headings must start at the beginning of the line
+MD024: true  # Multiple headings with the same content
+MD025: true  # Multiple top-level headings in the same document
+MD027: true  # Multiple spaces after blockquote symbol
+MD028: true  # Blank line inside blockquote
+MD029: true  # Ordered list item prefix
+MD030: true  # Spaces after list markers
+MD031: true  # Fenced code blocks should be surrounded by blank lines
+MD032: true  # Lists should be surrounded by blank lines
+MD033: true  # Inline HTML
+MD034: true  # Bare URL used
+MD036: true  # Emphasis used instead of a header
+MD037: true  # Spaces inside emphasis markers
+MD038: true  # Spaces inside code span elements
+MD039: true  # Spaces inside link elements
+MD040: true  # Fenced code blocks should have a language specified
+MD041: false # First line need not be h1
+MD046: true  # Code block style
+MD047: true  # Files should end with a single newline character
+MD048: true  # Code fence style
+MD049: true  # Required heading structure
+MD050: true  # Strong style should be consistent
+...
\ No newline at end of file
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
new file mode 100644
index 0000000..6bd4669
--- /dev/null
+++ b/.pre-commit-config.yaml
@@ -0,0 +1,43 @@
+---
+# See https://pre-commit.com for more information
+# See https://pre-commit.com/hooks.html for more hooks
+# Common commands:
+# pre-commit install
+# pre-commit autoupdate
+# pre-commit run --all-files --hook-stage commit
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.6.0
+    hooks:
+      - id: check-added-large-files
+      - id: destroyed-symlinks
+      - id: detect-private-key
+      - id: end-of-file-fixer
+      - id: mixed-line-ending
+        args: [--fix=auto]
+      - id: trailing-whitespace
+  - repo: https://github.com/igorshubovych/markdownlint-cli
+    rev: v0.41.0
+    hooks:
+      - id: markdownlint
+        args: ["--fix"]
+  - repo: https://github.com/executablebooks/mdformat
+    rev: 0.7.17
+    hooks:
+      - id: mdformat
+        additional_dependencies:
+          - mdformat-config
+          - mdformat-black
+          - mdformat-frontmatter
+        args: [--wrap=80]
+  - repo: https://github.com/adrienverge/yamllint.git
+    rev: v1.35.1
+    hooks:
+      - id: yamllint
+  - repo: https://github.com/pappasam/toml-sort
+    rev: v0.23.1
+    hooks:
+      - id: toml-sort-fix
+        args: [--in-place, --all, --trailing-comma-inline-array]
+        exclude: Cargo.lock
+...
\ No newline at end of file
diff --git a/.yamllint.yaml b/.yamllint.yaml
new file mode 100644
index 0000000..9276f3a
--- /dev/null
+++ b/.yamllint.yaml
@@ -0,0 +1,13 @@
+---
+# https://yamllint.readthedocs.io/en/stable/configuration.html#default-configuration
+extends: default
+
+rules:
+  truthy:
+    ignore:
+      .github/**/*.yaml
+  document-start:
+    level: error
+  document-end:
+    level: error
+...
\ No newline at end of file