ci.yml

name: CI

on: [push, pull_request]

jobs:
  build:

    runs-on: ubuntu-latest
    container:
      image: ubuntu:20.04
    env:
      OPENSSL_DIR: /usr/include/openssl
      OPENSSL_LIB_DIR: /usr/lib/x86_64-linux-gnu
      OPENSSL_INCLUDE_DIR: /usr/include/openssl

    steps:

    - name: Cache Rust dependencies
      uses: actions/cache@v2
      with:
        path: ~/.cargo
        key: ${{ runner.os }}-cargo-${{ hashFiles('**/Cargo.lock') }}
        restore-keys: ${{ runner.os }}-cargo-

    - name: Cache Rust build output
      uses: actions/cache@v2
      with:
        path: target
        key: ${{ runner.os }}-build-${{ hashFiles('**/Cargo.lock') }}
        restore-keys: ${{ runner.os }}-build-

    - name: Cache Node.js dependencies
      uses: actions/cache@v2
      with:
        path: ~/.npm
        key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
        restore-keys: ${{ runner.os }}-node-

    - name: Cache Maven dependencies
      uses: actions/cache@v2
      with:
        path: ~/.m2/repository
        key: ${{ runner.os }}-maven-${{ hashFiles('**/pom.xml') }}
        restore-keys: ${{ runner.os }}-maven-

    - name: Cache Go modules
      uses: actions/cache@v2
      with:
        path: ~/.cache/go-build
        key: ${{ runner.os }}-go-${{ hashFiles('**/go.sum') }}
        restore-keys: ${{ runner.os }}-go-

    - name: Cache Funnel dependencies
      uses: actions/cache@v2
      with:
        path: ~/funnel/build
        key: ${{ runner.os }}-funnel-${{ hashFiles('**/funnel/*') }}
        restore-keys: ${{ runner.os }}-funnel-

    - name: Install Rust
      run: |
        apt-get update
        apt-get install -y curl git build-essential libssl-dev 
        if ! command -v rustup &> /dev/null # might not be installed while executing using `act`
        then
            curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y
            . $HOME/.cargo/env
        fi
        rustup update stable
    - name: Install Node.js # required for build-models.sh
      run: |
        REQUIRED_NODE_VERSION=22
        if command -v node &> /dev/null; then
            curl -fsSL https://deb.nodesource.com/setup_22.x -o nodesource_setup.sh
            bash nodesource_setup.sh
            apt-get install -y nodejs
        fi
    - name: Set up JDK 11 # required for build-models.sh
      uses: actions/setup-java@v2
      with:
        distribution: 'adopt'
        java-version: '11'
    - name: Install Go
      uses: actions/setup-go@v2
      with:
        go-version: '^1.22'  
    - name: Install Funnel
      run: |
          if [ -d "funnel" ]; then rm -Rf funnel; fi
          git clone https://github.com/ohsu-comp-bio/funnel.git
          cd funnel && make && make install && cd ..
    - uses: actions/checkout@v2 # checkout the repository
    - name: Build models
      run: |
        . $HOME/.cargo/env
        bash ./build-models.sh
    - name: Build
      run: |
        . $HOME/.cargo/env
        cargo build --verbose
    - name: Run tests
      run: |
        . $HOME/.cargo/env
        bash ./run-tests.sh
    - name: Lint
      run: |
        . $HOME/.cargo/env
        cargo clippy -- -D warnings
    - name: Format
      run: |
        . $HOME/.cargo/env
        cargo fmt -- --check