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Running V-Pipe on ELIXIR On Cloud (downstream processing) #2

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gordonkoehn opened this issue Nov 3, 2024 · 1 comment
Open
6 tasks done

Running V-Pipe on ELIXIR On Cloud (downstream processing) #2

gordonkoehn opened this issue Nov 3, 2024 · 1 comment
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@gordonkoehn @DrYak
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language: py topic: v-pipe type: code type: deployment type: meta

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@gordonkoehn
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gordonkoehn commented Nov 3, 2024 •
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Why

V-Pipe runs the Swiss national program to monitor viral variants (Sars-CoV-2, RSV and Influenza-A/B).
It has so far been deployed in cluster settings and we'll bring it to the cloud for more dynamic interactions.

What

  • Fetch V-Pipe pre-processed output
  • Run On-Demand, user-specified request for identifying new viral variariant dynamics using Lollipop

How

  • Deployment: Docker on Compute Instance
  • Pure Python
  • Frontend: e.g. Streamlit or similar

Task List:
@gordonkoehn gordonkoehn self-assigned this Nov 3, 2024
@gordonkoehn
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Let's defined the next goals.

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@DrYak DrYak

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language: py topic: v-pipe type: code type: deployment type: meta
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BioHackathon Europe '24
Status: In progress
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@gordonkoehn @DrYak