Peptides v. 2.2

The Wimley-White hydrophobicity scales were added thanks to Alexander Komin [email protected] suggestion
dosorio · Jun 5, 2017 · d9c4668 · d9c4668
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: Peptides
 Version: 2.2
-Date: 2017-05-25
+Date: 2017-06-05
 Title: Calculate Indices and Theoretical Physicochemical Properties of Protein Sequences
 Authors@R: c(person("Daniel","Osorio",email="[email protected]",role=c("aut","cre")),
              person("Paola","Rondon-Villarreal",role=c("aut","ths")),

diff --git a/NEWS.md b/NEWS.md
@@ -1,9 +1,18 @@
 NEWS
 ====
-**Peptides v.2.1**
-* The Wimley-White hydrophobicity scales were added thanks to Alexander Komin <[email protected]> suggestion
+**Peptides v.2.2**
+
+* The Wimley-White hydrophobicity scales were added thanks to Alexander Komin <[email protected]> suggestion. WW scales can be used as:
+1. **interfaceScale_pH2:** White, Stephen (2006-06-29). "Experimentally Determined Hydrophobicity Scales". University of California, Irvine. Retrieved 2017-05-25
+2. **interfaceScale_pH8:** White, Stephen (2006-06-29). "Experimentally Determined Hydrophobicity Scales". University of California, Irvine. Retrieved 2017-05-25
+3. **octanolScale_pH2:** White, Stephen (2006-06-29). "Experimentally Determined Hydrophobicity Scales". University of California, Irvine. Retrieved 2017-05-25
+4. **octanolScale_pH8:** White, Stephen (2006-06-29). "Experimentally Determined Hydrophobicity Scales". University of California, Irvine. Retrieved 2017-05-25
+5. **oiScale_pH2:** White, Stephen (2006-06-29). "Experimentally Determined Hydrophobicity Scales". University of California, Irvine. Retrieved 2017-05-25
+6. **oiScale_pH8:** White, Stephen (2006-06-29). "Experimentally Determined Hydrophobicity Scales". University of California, Irvine. Retrieved 2017-05-25
+
 
 **Peptides v.2.1**
+
 * The charge and pI functions were rewritten in C++ and an optimization approach was used thanks to Scott McCain (@jspmccain) and Timothée Poisot (@tpoisot) suggestion.
 
 * An error in zScales function data was solved. Q and E values were wrongly interchanged in v 2.0.

diff --git a/tests/testthat/test.aacheck.R b/tests/testthat/test.aacheck.R
@@ -0,0 +1,5 @@
+# NON STANDARD AMINO ACIDS PRESENT
+
+test_that("Non standard aminoacids present in sequence",{expect_warning(
+  aaCheck("KLRSTZMZ")
+)})