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Accept BAM files of unaligned reads in addition to FAST[AQ] #523

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mr-c opened this issue Jul 12, 2014 · 1 comment
Open

Accept BAM files of unaligned reads in addition to FAST[AQ] #523

mr-c opened this issue Jul 12, 2014 · 1 comment
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Python theme:best-practices theme:customer-oriented
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1.4

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@mr-c
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mr-c commented Jul 12, 2014

Allows the storage of metadata at the file level and the read level.
Unambiguous read pairing

http://blastedbio.blogspot.com/2011/10/fastq-must-die-long-live-sambam.html

(Also suggested at the Galaxy Hackathon)

Would allow us to store partition information more intelligently.

Could also include provenance as well.
@mr-c mr-c added this to the 1.1.1+ Release milestone Jul 12, 2014
@mr-c mr-c modified the milestones: 1.1.1+ Release, 1.1 + 2 Aug 1, 2014
This was referenced Oct 30, 2014
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@ctb
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ctb commented Nov 18, 2015

Also see @drtamermansour reason for BAM support: dib-lab/dib-lab#69

standage added a commit that referenced this issue Aug 29, 2016
@standage
Plunging head-first into an ill-prepared attempt to solve #523.
d11bc05
@standage standage mentioned this issue Aug 29, 2016
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