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ChangeLog
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======================================================================
Originator: Chris Fischer
Date: 4-8-2021
Tag: cime5.8.42
Answer Changes: None
Tests: hand tested and scripts_regression_tests
Dependencies:
Brief Summary:
- No need to test ESMF_AWARE_THREADING here.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
b655c9127 Merge pull request #3918 from jedwards4b/ninst_fix
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/XML/env_mach_pes.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 4-6-2021
Tag: cime5.8.41
Answer Changes: Climate Changing just for T compsets.
Tests: scripts_regression_tests
SMS_Vnuopc_D_P1x1.f10_f10_mg37.I2000Clm50Sp.izumi_nag.clm-default
Dependencies:
Brief Summary:
- Save Scorpio I/O statistics.
- Support for threading in two different ways for esmf.
- Fix issue with build of nag mpiserial.
- Handle case when domain_root is not present.
- Point to new dlnd scpl forcing data.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
81d4f2033 Merge pull request #3904 from ESMCI/jayeshkrishna/spio_stats_provenance
ada43e1c9 Merge pull request #3899 from jedwards4b/esmf_threading
b86d2e1b5 Merge pull request #3908 from jedwards4b/izumi_nag_mpiserial_fix
000b3c7d5 Merge pull request #3903 from jedwards4b/domain_root_fix
af4d0ae47 Merge pull request #3901 from billsacks/dlnd_new_glc_forcings
Modified files: git diff --name-status [previous_tag]
M .github/workflows/srt.yml
M config/cesm/machines/config_machines.xml
M scripts/Tools/pelayout
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/provenance.py
M src/components/data_comps_mct/dlnd/cime_config/config_component.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 3-30-2021
Tag: cime5.8.40
Answer Changes:
Tests:
Dependencies:
Brief Summary:
- Bug fix for generating C/G nuopc compsets
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
a900c8ef6 Merge pull request #3900 from mvertens/feature/nuopc_grids_bugfix
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/XML/grids.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 3-26-2021
Tag: cime5.8.39
Answer Changes: Round Off for nuopc/cmeps configurations.
Tests: scripts_regression_tests, SMS_D_Ld6_Mmpi-serial_Vnuopc.1x1_smallvilleIA.IHistClm45BgcCropQianRs,
SMS_D_Ld6_Mmpi-serial_Vnuopc.1x1_smallvilleIA.IHistClm45BgcCropQianRs
Dependencies:
Brief Summary:
- Add ROF support in the primary component computation.
- Bug fix for single column mode for nuopc/cmeps.
- Fixes to nuopc single column PTS_LAT and PTS_LON.
- Switch e3sm config to COMP_ROOT_DIR.
- Fix format descriptor in mem-logging for IBM compiler.
- Bump pillow from 7.1.2 to 8.1.1 in /tools/statistical_ensemble_test/pyCECT/docs.
- Bug fix for specifying mesh for 0.25 degree runoff grid.
- Changes for zeus port.
- Avoid adding CDEPS things to inc & lib paths with LILAC.
- New nuopc/cmeps single/column single/point functionality.
- Logs tail of cprnc outputs to TestStatus.log.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
1e705ee39 Merge pull request #3895 from ESMCI/jgfouca/add_rof_support_to_primary_comp
f00ba9e2c Merge pull request #3898 from ESMCI/mvertens/scol_bugfix
4d16c5b91 Merge pull request #3894 from ESMCI/mvertens/scol_bugfix
92e0ecfbe Merge pull request #3891 from ESMCI/rljacob/update-e3sm-config
de4a1e282 Merge pull request #3879 from ESMCI/azamat/mprof/replace-indef-fmt-xlf
cd997cab8 Merge pull request #3890 from ESMCI/dependabot/pip/tools/statistical_ensemble_test/pyCECT/docs/pillow-8.1.1
0cd2268d5 Merge pull request #3889 from ESMCI/mvertens/drof_mesh_bugfix
4822938a0 Merge pull request #3880 from ESMCI/peano/zeus_update_port
929fd466e Merge pull request #3882 from billsacks/no_cdeps_libs_with_lilac
17a980fbf Merge pull request #3884 from ESMCI/mvertens/scol
47514026c Merge pull request #3861 from jasonb5/log_cprnc_tail
Modified files: git diff --name-status [previous_tag]
M .github/workflows/srt.yml
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/config_grids_mct.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/config_files.xml
R076 config/xml_schemas/config_grids_v2.1.xsd config/xml_schemas/config_grids_v2.2.xsd
M scripts/Tools/Makefile
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M src/drivers/mct/main/cime_comp_mod.F90
M tools/statistical_ensemble_test/pyCECT/docs/requirements.txt
======================================================================
======================================================================
Originator: Chris Fischer
Date: 3-12-2021
Tag: cime5.8.38
Answer Changes: bit-for-bit, climate-changing for trigrid
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
User interface changes:
- Disable kokkos tests when building for E3SM.
- Remove references to CISM1-only grid for CESM.
- NAG port for nuopc.
- Generalize the file pattern match for cism.config files.
- Add header row and perf-archiving to memory profiling logs.
- Add run scripts to provenance capture.
- Make 64bit data default netcdf format.
- PIO2 update.
- Enable 2010 SST climatology for all variants of F-2010 compsets.
- Improve check_input_data tool.
- Fixes case where a skipped test would result in logfile_name being undefined.
- SCORPIO needs _PNETCDF.
- nuopc result is in drv.log not med.log.
- Adds support of DATM_MODE=CLM1PT for ELM.
- Introduction of MASK_GRID for CMEPS.
- Fixes cleaning up only on success.
- bless/compare_test_results should not process build-only tests.
- Minor changes to Makefile needed for izumi nag build to link to ESMF lib.
- Update driver-mct support for trigrid configuration where lnd is not on the atm grid.
- Make update success more robust.
- env_mach_specific needs to process all mpirun nodes from machobj.
- Add a new env_run XML value for E3SM: CASE_GROUP.
- Turn PIO_USE_MALLOC back on.
- Add machine frontera and fix run_exe setting issue.
- Remove collapse directives for Cray compiler.
- Fix some documentation of EXEROOT.
- Fix i4 in shr_reposum_mod and add comments.
PR summary: git log --oneline --first-parent [previous_tag]..master
33f236c48 Merge pull request #3881 from ESMCI/jgfouca/disable_kokkos_tests
3321317ff Merge pull request #3785 from billsacks/remove_cism1
d67b18ec7 Merge pull request #3878 from jedwards4b/nag_port
75e8f7af6 Merge pull request #3869 from billsacks/generalize_cism_config
fd30d9c1f Merge pull request #3875 from ESMCI/azamat/mprof/add-header-archiving
b164a7f5b Merge pull request #3873 from sarats/sarats/capture-runscripts-provenance
56c121ed8 Merge pull request #3870 from jedwards4b/make_64bit_data_default
162767bde Merge pull request #3859 from jedwards4b/pio2_update
5253df01c Merge pull request #3867 from ESMCI/wlin/F2010_sstdata
e76f2cef8 Merge pull request #3711 from ESMCI/wpcoomb/improve_check_input_data_tool
2b49cf54f Merge pull request #3860 from jasonb5/fix_compare_test_results_undefined
5382666a7 Merge pull request #3864 from ESMCI/jgfouca/fix_for_makefile
9fd7ee81c Merge pull request #3863 from jedwards4b/nuopc_log_fix
3f5a34720 Merge pull request #3845 from ESMCI/bishtgautam/user-defined-forcing-for-elm
2604dd663 Merge pull request #3841 from ESMCI/mvertens/bugfixes_auxcam
af03e9868 Merge pull request #3847 from jasonb5/fix_directory_removal
f90d23a50 Merge pull request #3855 from ESMCI/jgfouca/fix_test_results_for_B
dbf9f538a Merge pull request #3856 from fvitt/izumi_esmflib
55704c82a Merge pull request #3853 from ESMCI/jonbob/update-trigrid-support
78448a114 Merge pull request #3851 from ESMCI/jgfouca/update_success_robust
6f2688798 Merge pull request #3848 from ESMCI/jgfouca/fix_mpirun_env_mach_specific
743a2c967 Merge pull request #3844 from ESMCI/jgfouca/add_case_group
d088f9826 Merge pull request #3843 from ESMCI/jgfouca/e3sm_cime_temp
ef6b28c80 Merge pull request #3836 from jedwards4b/add_frontera_fix_run_exe_xml_issue
6335dd8b8 Merge pull request #3830 from ESMCI/azamat/mct-cime/rm-collapse-for-cray
664376d67 Merge pull request #3840 from billsacks/fix_doc_exeroot
0940e6a6d Merge pull request #3839 from ESMCI/worleyph/reprosum_i4_fix
Modified files: git diff --name-status [previous_tag]
M .github/workflows/srt.yml
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M doc/source/users_guide/running-a-case.rst
M scripts/Tools/Makefile
M scripts/create_newcase
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/SystemTests/nodefail.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/compare_test_results.py
M scripts/lib/CIME/provenance.py
A scripts/lib/CIME/tests/test_compare_test_results.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.kokkos
M src/components/data_comps_mct/datm/cime_config/buildnml
M src/components/data_comps_mct/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps_mct/docn/cime_config/config_component.xml
M src/components/xcpl_comps_nuopc/xglc/src/glc_comp_nuopc.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/prep_rof_mod.F90
M src/drivers/mct/main/seq_diag_mct.F90
M src/drivers/mct/main/seq_frac_mct.F90
M src/externals/mct/mct/m_AttrVect.F90
M src/externals/pio2/.github/workflows/cmake.yml
A src/externals/pio2/.github/workflows/cmake_netcdf-4.7.4_hdf5-1.10.7_pnetcdf-12.1_ncint_mpich-3.3_asan.yml
A src/externals/pio2/.github/workflows/netcdf-4.7.4_hdf5-1.10.7_pnetcdf-12.1_ncint_mpich-3.3_asan.yml
A src/externals/pio2/.github/workflows/netcdf-4.7.4_hdf5-1.12.0_no_pnetcdf_ncint_mpich-3.3.yml
A src/externals/pio2/.github/workflows/netcdf-4.7.4_hdf5-1.12.0_pnetcdf-12.2_ncint_mpich-3.3_asan.yml
R100 src/externals/pio2/.github/workflows/a4.yml src/externals/pio2/.github/workflows/netcdf-4.7.4_pnetcdf-12.1_ncint_mpich-3.3.yml
R100 src/externals/pio2/.github/workflows/a3.yml src/externals/pio2/.github/workflows/netcdf-4.7.4_pnetcdf-12.1_ncint_openmpi_4.0.4.yml
R100 src/externals/pio2/.github/workflows/strict_autotools.yml src/externals/pio2/.github/workflows/strict_autotools_ubuntu_latest.yml
M src/externals/pio2/README.md
M src/externals/pio2/configure.ac
M src/externals/pio2/ctest/CTestScript-Test.cmake
A src/externals/pio2/doc/images/I_O_on_many_async_small.png
M src/externals/pio2/src/clib/pio.h
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_darray_int.c
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_sc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/src/flib/Makefile.am
M src/externals/pio2/src/flib/piolib_mod.F90
M src/externals/pio2/src/ncint/ncintdispatch.c
M src/externals/pio2/src/ncint/ncintdispatch.h
M src/externals/pio2/tests/cunit/CMakeLists.txt
M src/externals/pio2/tests/cunit/pio_tests.h
M src/externals/pio2/tests/cunit/run_tests.sh.in
M src/externals/pio2/tests/cunit/test_async_1d.c
M src/externals/pio2/tests/cunit/test_async_perf.c
M src/externals/pio2/tests/cunit/test_darray_multivar.c
M src/externals/pio2/tests/cunit/test_darray_multivar3.c
M src/externals/pio2/tests/cunit/test_perf2.c
M src/externals/pio2/tests/cunit/test_simple.c
M src/externals/pio2/tests/fncint/ftst_pio_orig.f90
M src/externals/pio2/tests/ncint/pio_err_macros.h
M src/externals/pio2/tests/ncint/tst_var_compress.c
M src/externals/pio2/tests/unit/basic_tests.F90
M src/externals/pio2/tests/unit/driver.F90
M src/externals/pio2/tests/unit/ncdf_tests.F90
M src/share/unit_test_stubs/pio/pio.F90.in
M src/share/util/shr_pio_mod.F90
M src/share/util/shr_reprosum_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 1-27-2021
Tag: cime5.8.37
Answer Changes: Some fill_values and pgi on cheyenne
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- wait_for_tests: tweak cdash nml compare column.
- Pio bld fixes.
- pnetcdf detection correction.
- Added deleted f10_f10_musgs grid back into config_grids.xml.
- Changes needed to create fractions/masks at runtime with NUOPC.
- Better create_test/wait_for_tests integration.
- Add support for Chrysalis in saving provenance info.
- Remove unused logic.
- Update PIO2 to latest version and add testing support for PIO async tests.
- Update esmf to latest on cheyenne.
- Add pnetcdf module to centos7-linux build.
- Allow srt to skip some tests.
- Pass integer and not floating point for cpus-per-task.
- Need to get queue from case, not batch object.
- Update cheyenne esmf build.
- Seq io fix pio2.
- Add some SCREAM config dirs.
- Update to PyCECT 3.2.0.
- Update pgi and esmf on cheyenne.
- Add memory usage logging.
- Facilitate adding defaults for a namelist group conditionally.
- Add a mask.
- Check if TEST_ROOT exists earlier in cleanup from scripts_regression_tests.
- query_testlists: replace newlines in comments with spaces.
User interface changes:
- Slight change to output of query_testlists
PR summary: git log --oneline --first-parent [previous_tag]..master
d005fc583 Merge pull request #3829 from ESMCI/jgfouca/tweak_cdash_nml_output
1c949c056 Merge pull request #3837 from jedwards4b/pio_bld_fixes
738bd23c4 Merge pull request #3822 from jedwards4b/pio2_pnetcdf_detection
6df28a93b Merge pull request #3832 from ESMCI/mvertens/bugfix_f10maskusgs
79ad32f53 Merge pull request #3827 from ESMCI/mvertens/dynfrac
6834f9da8 Merge pull request #3824 from ESMCI/jgfouca/misc_cime_updates
10675d59e Merge pull request #3819 from ESMCI/worleyph/chrysalis_support
cc2fa1c85 Merge pull request #3809 from ESMCI/jgfouca/minor_makefile_cleanup
b71c1f341 Merge pull request #3817 from jedwards4b/pio_async
c0b4e0714 update esmf to latest on cheyenne
52e50f9f1 add pnetcdf module to centos7-linux build
c9c7f88e2 Merge pull request #3821 from jedwards4b/skip_tests
93243a4d8 Merge pull request #3820 from adityakavalur/patch-1
7e9ee92fa need to get queue from case, not batch object
c6a0fe00e update cheyenne esmf build
d74ba19a7 Merge pull request #3811 from jedwards4b/seq_io_fix_pio2
56a4ebb62 Merge pull request #3813 from ESMCI/jgfouca/add_scream_config_files
00a9e6205 Merge pull request #3812 from ESMCI/fischer/pycect_update
2818cf59c Merge pull request #3803 from jedwards4b/cheyenne_pgi
aecb9b1dc Merge pull request #3801 from ESMCI/azamat/driver/mem-profile-logging
ac45f7a7e Merge pull request #3804 from billsacks/nmlgen_skip_groups
6dc716233 Merge pull request #3800 from jedwards4b/add_a_mask
0d18eabfa Merge pull request #3798 from ESMCI/wpcoomb_fix_cleanup_in_regression_tests
22276aad9 Merge pull request #3797 from billsacks/no_newline_in_query_testlists
Modified files: git diff --name-status [previous_tag]
M .github/workflows/srt.yml
M config/cesm/config_grids.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/config_files.xml
M config/xml_schemas/config_grids_v2.1.xsd
M config/xml_schemas/config_grids_v2.xsd
M scripts/Tools/Makefile
M scripts/Tools/cime_bisect
M scripts/Tools/wait_for_tests
M scripts/create_test
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_run.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/compare_namelists.py
M scripts/lib/CIME/cs_status.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/test_utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/get_tests.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.pio
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/main/seq_io_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/externals/pio2/.gitignore
M src/externals/pio2/CMakeLists.txt
M src/externals/pio2/configure.ac
M src/externals/pio2/examples/CMakeLists.txt
M src/externals/pio2/examples/c/example1.c
M src/externals/pio2/examples/c/example2.c
M src/externals/pio2/examples/f03/CMakeLists.txt
A src/externals/pio2/examples/f03/exampleAsyncPio.F90
M src/externals/pio2/examples/f03/examplePio.F90
M src/externals/pio2/src/clib/pio.h
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_error.h
M src/externals/pio2/src/clib/pio_getput_int.c
M src/externals/pio2/src/clib/pio_internal.h
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pio_rearrange.c
M src/externals/pio2/src/clib/pio_spmd.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/src/flib/ncint_mod.F90
M src/externals/pio2/src/flib/pio.F90
M src/externals/pio2/src/flib/pio_nf.F90
M src/externals/pio2/src/flib/pio_types.F90
M src/externals/pio2/src/flib/piolib_mod.F90
M src/externals/pio2/src/flib/pionfget_mod.F90.in
M src/externals/pio2/tests/cunit/CMakeLists.txt
M src/externals/pio2/tests/cunit/test_async_1d.c
M src/externals/pio2/tests/cunit/test_async_3proc.c
M src/externals/pio2/tests/cunit/test_async_4proc.c
M src/externals/pio2/tests/cunit/test_async_manyproc.c
M src/externals/pio2/tests/cunit/test_async_multi2.c
M src/externals/pio2/tests/cunit/test_async_multicomp.c
M src/externals/pio2/tests/cunit/test_async_perf.c
M src/externals/pio2/tests/cunit/test_async_simple.c
M src/externals/pio2/tests/cunit/test_darray_2sync.c
M src/externals/pio2/tests/cunit/test_darray_async.c
A src/externals/pio2/tests/cunit/test_darray_async_from_comm.c
M src/externals/pio2/tests/cunit/test_darray_async_many.c
M src/externals/pio2/tests/cunit/test_darray_async_simple.c
M src/externals/pio2/tests/cunit/test_perf2.c
M src/externals/pio2/tests/cunit/test_rearr.c
M src/externals/pio2/tests/fncint/ftst_pio.f90
M src/externals/pio2/tests/general/CMakeLists.txt
M src/externals/pio2/tests/general/Makefile.am
M src/externals/pio2/tests/general/ncdf_get_put.F90.in
A src/externals/pio2/tests/general/pio_decomp_tests_2d_async.F90.in
A src/externals/pio2/tests/general/pio_decomp_tests_2d_halo.F90.in
A src/externals/pio2/tests/general/pio_decomphalo_tests_2d.F90.in
A src/externals/pio2/tests/general/pio_iosystem_async_tests.F90.in
M src/externals/pio2/tests/general/run_tests.sh.in
M src/externals/pio2/tests/general/util/pio_tf_f90gen.pl
M src/externals/pio2/tests/general/util/pio_tutil.F90
M src/externals/pio2/tests/ncint/pio_err_macros.h
M src/externals/pio2/tests/performance/pioperformance.F90
M src/share/nuopc/seq_drydep_mod.F90
M src/share/streams/shr_dmodel_mod.F90
M src/share/streams/shr_strdata_mod.F90
M src/share/unit_test_stubs/pio/pio.F90.in
M src/share/util/shr_pio_mod.F90
A tools/statistical_ensemble_test/pyCECT/CHANGES.rst
M tools/statistical_ensemble_test/pyCECT/EET.py
M tools/statistical_ensemble_test/pyCECT/LICENSE.txt
A tools/statistical_ensemble_test/pyCECT/README.rst
D tools/statistical_ensemble_test/pyCECT/README_pyCECT.rst
D tools/statistical_ensemble_test/pyCECT/README_pyEnsSum.rst
D tools/statistical_ensemble_test/pyCECT/README_pyEnsSumPop.rst
D tools/statistical_ensemble_test/pyCECT/beta06_ens_excluded_varlist.json
D tools/statistical_ensemble_test/pyCECT/beta06_ens_excluded_varlist_a.json
A tools/statistical_ensemble_test/pyCECT/docs/Makefile
A tools/statistical_ensemble_test/pyCECT/docs/conf.py
A tools/statistical_ensemble_test/pyCECT/docs/index.rst
A tools/statistical_ensemble_test/pyCECT/docs/make.bat
A tools/statistical_ensemble_test/pyCECT/docs/requirements.txt
A tools/statistical_ensemble_test/pyCECT/docs/source/installation.rst
A tools/statistical_ensemble_test/pyCECT/docs/source/pyCECT.rst
A tools/statistical_ensemble_test/pyCECT/docs/source/pyEnsSum.rst
A tools/statistical_ensemble_test/pyCECT/docs/source/pyEnsSumPop.rst
A tools/statistical_ensemble_test/pyCECT/docs/source/readme.rst
R100 tools/statistical_ensemble_test/pyCECT/exclude_empty.json tools/statistical_ensemble_test/pyCECT/empty_excluded.json
D tools/statistical_ensemble_test/pyCECT/ens_excluded_varlist.json
D tools/statistical_ensemble_test/pyCECT/ens_sub.pbs
D tools/statistical_ensemble_test/pyCECT/ens_sub.sh
A tools/statistical_ensemble_test/pyCECT/excluded_varlist.json
D tools/statistical_ensemble_test/pyCECT/gm_cumul.sh
M tools/statistical_ensemble_test/pyCECT/pyCECT.py
M tools/statistical_ensemble_test/pyCECT/pyEnsLib.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSum.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSumPop.py
A tools/statistical_ensemble_test/pyCECT/pyPlots.py
A tools/statistical_ensemble_test/pyCECT/readthedocs.yml
M tools/statistical_ensemble_test/pyCECT/test_pop_CECT.sh
A tools/statistical_ensemble_test/pyCECT/test_pyEnsSum.sh
M tools/statistical_ensemble_test/pyCECT/test_pyEnsSumPop.sh
A tools/statistical_ensemble_test/pyCECT/test_uf_cam_ect.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 12-11-2020
Tag: cime5.8.36
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Add a useful check to wait_for_tests.
- Fix issue with time variable in ha files.
- Revert "Merge pull request #3788 from ESMCI/azamat/driver/mem-usage-logging."
- Add memory usage logging for memory profiling.
- Update OS process id error-checking in GPTL's get_memusage.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
a0fb01a33 Merge pull request #3796 from ESMCI/jgfouca/wait_for_tests_expect
7c9523ef3 Merge pull request #3794 from jedwards4b/cplhistavg_fix
c258cdf08 Merge pull request #3791 from ESMCI/jgfouca/revert_mem-usage-logging
9c64b5ac2 Merge pull request #3788 from ESMCI/azamat/driver/mem-usage-logging
5cef5558c Merge pull request #3781 from ESMCI/azamat/gptl/increase-pid-ceiling
Modified files: git diff --name-status [previous_tag]
A .github/workflows/srt.yml
D .travis.yml
M ChangeLog
M config/cesm/config_archive.xml
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/config_grids_nuopc.xml
M config/cesm/config_inputdata.xml
M config/cesm/machines/Depends.intel
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M config/config_tests.xml
D config/e3sm/allactive/config_compsets.xml
D config/e3sm/allactive/config_pesall.xml
D config/e3sm/allactive/testlist_allactive.xml
D config/e3sm/config_archive.xml
M config/e3sm/config_files.xml
D config/e3sm/config_grids.xml
D config/e3sm/config_inputdata.xml
D config/e3sm/machines/Depends.cray
D config/e3sm/machines/Depends.cray.cmake
D config/e3sm/machines/Depends.gnu
D config/e3sm/machines/Depends.gnu.cmake
D config/e3sm/machines/Depends.ibm
D config/e3sm/machines/Depends.ibm.cmake
D config/e3sm/machines/Depends.intel
D config/e3sm/machines/Depends.intel.cmake
D config/e3sm/machines/Depends.nag
D config/e3sm/machines/Depends.nag.cmake
D config/e3sm/machines/Depends.summit.cmake
D config/e3sm/machines/Depends.summit.pgiacc
D config/e3sm/machines/Depends.summit.pgiacc.cmake
D config/e3sm/machines/Depends.summit.pgigpu
D config/e3sm/machines/Depends.summit.pgigpu.cmake
D config/e3sm/machines/Depends.summitdev.pgiacc
D config/e3sm/machines/Depends.summitdev.pgiacc.cmake
D config/e3sm/machines/README
D config/e3sm/machines/config_batch.xml
D config/e3sm/machines/config_compilers.xml
D config/e3sm/machines/config_machines.xml
D config/e3sm/machines/config_pio.xml
D config/e3sm/machines/config_workflow.xml
D config/e3sm/machines/syslog.anvil
D config/e3sm/machines/syslog.compy
D config/e3sm/machines/syslog.cori-haswell
D config/e3sm/machines/syslog.cori-knl
D config/e3sm/machines/syslog.noop
D config/e3sm/machines/syslog.summit
D config/e3sm/machines/syslog.theta
D config/e3sm/machines/syslog.titan
D config/e3sm/machines/template.case.run
D config/e3sm/machines/template.case.run.sh
D config/e3sm/machines/template.case.test
D config/e3sm/machines/template.ocn_diagnostics
D config/e3sm/machines/template.st_archive
D config/e3sm/machines/template.timeseries
D config/e3sm/machines/userdefined_laptop_template/README.md
D config/e3sm/machines/userdefined_laptop_template/config_compilers.xml
D config/e3sm/machines/userdefined_laptop_template/config_machines.xml
D config/e3sm/machines/userdefined_laptop_template/config_pes.xml
D config/e3sm/testmods_dirs/allactive/force_netcdf_pio/shell_commands
D config/e3sm/testmods_dirs/allactive/mach/pet/shell_commands
D config/e3sm/testmods_dirs/allactive/mach_mods/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgc/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgc/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1bgc/user_nl_clm
D config/e3sm/testmods_dirs/allactive/v1bgc/user_nl_mpaso
D config/e3sm/testmods_dirs/allactive/v1bgc_1850/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgc_1850/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1bgc_1850/user_nl_clm
D config/e3sm/testmods_dirs/allactive/v1bgc_1850/user_nl_mpaso
D config/e3sm/testmods_dirs/allactive/v1bgceca/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgceca/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1bgceca/user_nl_clm
D config/e3sm/testmods_dirs/allactive/v1bgceca/user_nl_mpaso
D config/e3sm/testmods_dirs/allactive/v1bgceca_1850/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgceca_1850/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1bgceca_1850/user_nl_clm
D config/e3sm/testmods_dirs/allactive/v1bgceca_1850/user_nl_mpaso
D config/e3sm/testmods_dirs/allactive/v1cmip6/README
D config/e3sm/testmods_dirs/allactive/v1cmip6/shell_commands
D config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_clm
D config/e3sm/testmods_dirs/bench/gmpas_noio/shell_commands
D config/e3sm/testmods_dirs/bench/gmpas_noio/user_nl_mpaso
D config/e3sm/testmods_dirs/bench/gmpas_noio/user_nl_mpassi
D config/e3sm/testmods_dirs/bench/wcycl/hires/shell_commands
D config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_cam
D config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_mpaso
D config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_mpassi
D config/e3sm/testmods_dirs/bench/wcycl/lores/shell_commands
D config/e3sm/testmods_dirs/bench/wcycl/lores/user_nl_cam
D config/e3sm/testmods_dirs/bench/wcycl/lores/user_nl_clm
D config/e3sm/tests.py
D config/e3sm/usermods_dirs/README
M config/ufs/config_files.xml
M config/ufs/config_grids.xml
M config/ufs/config_inputdata.xml
M config/ufs/machines/config_compilers.xml
M config/ufs/machines/config_machines.xml
M config/xml_schemas/config_compilers_v2.xsd
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/entry_id_base.xsd
M config/xml_schemas/entry_id_base_version3.xsd
M config/xml_schemas/env_mach_specific.xsd
M config/xml_schemas/testlist.xsd
M scripts/Tools/Makefile
M scripts/Tools/case.build
D scripts/Tools/e3sm_cime_merge
D scripts/Tools/e3sm_cime_split
A scripts/Tools/e3sm_compile_wrap.py
M scripts/Tools/jenkins_generic_job
A scripts/Tools/mvsource
M scripts/Tools/preview_run
M scripts/Tools/xmlchange
M scripts/create_newcase
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/archive.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/env_test.py
M scripts/lib/CIME/XML/env_workflow.py
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/XML/pes.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/buildnml.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/simple_compare.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
D scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/get_tests.py
M scripts/tests/CTestConfig.cmake
M scripts/tests/scripts_regression_tests.py
M scripts/tests/user_mods_test3/shell_commands
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.internal_components
M src/build_scripts/buildlib.pio
M src/build_scripts/buildlib_cmake.internal_components
M src/components/data_comps_mct/datm/cime_config/buildnml
M src/components/data_comps_mct/datm/cime_config/config_component.xml
M src/components/data_comps_mct/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps_mct/datm/src/datm_comp_mod.F90
M src/components/data_comps_mct/datm/src/datm_shr_mod.F90
M src/components/data_comps_mct/dlnd/cime_config/config_component.xml
M src/components/data_comps_mct/dlnd/cime_config/namelist_definition_dlnd.xml
M src/components/data_comps_mct/dlnd/src/dlnd_comp_mod.F90
M src/components/data_comps_mct/dlnd/src/dlnd_shr_mod.F90
M src/components/data_comps_mct/docn/cime_config/config_component.xml
M src/components/data_comps_mct/docn/src/docn_comp_mod.F90
M src/components/data_comps_mct/docn/src/ocn_comp_mct.F90
M src/components/data_comps_mct/drof/cime_config/config_component.xml
M src/components/data_comps_mct/drof/cime_config/namelist_definition_drof.xml
D src/components/data_comps_nuopc/datm/cime_config/buildlib
D src/components/data_comps_nuopc/datm/cime_config/buildlib_cmake
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M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/main/seq_io_mod.F90
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M src/externals/mct/mpeu/m_ioutil.F90
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M src/share/util/shr_string_mod.F90
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M tools/cprnc/compare_vars_mod.F90.in
M tools/cprnc/run_tests
M tools/cprnc/test_inputs/README
A tools/cprnc/test_inputs/control_int.nc
A tools/cprnc/test_inputs/int_missing.nc
M tools/statistical_ensemble_test/ensemble.py
M tools/statistical_ensemble_test/single_run.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 12-7-2020
Tag: cime5.8.35
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Make the default pio_version = 2.
- Changes for nuopc xcpl_comps needed for new ice sheets capability.
- Print TPUTCOMP difference to TestStatus.log.
- Correct typo in pgi module on cheyenne.
- Changes to implement ESMF aware threading in the nuopc driver.
- Add back pio version cpp.
- Fix pgi nuopc build issue.
- More e3sm build upgrades.
- Fix some build issues, for nuopc and cam_dycore.
- Build nuopc_cap with csm_share.
- Update seq_io_write_time to work for CPLHIST run.
- Fix python3 incompatibilities in case.py.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
184f5886f Merge pull request #3732 from jedwards4b/change_pio_default_version
bfe14e4aa Merge pull request #3787 from ESMCI/mvertens/icesheets
ca6712bb8 Merge pull request #3786 from billsacks/log_tputcomp
aff5b52e2 correct typo in pgi module on cheyenne
13996b82d Merge pull request #3784 from jedwards4b/nuopc_timing_cheyenne_esmf
1bcacca70 add back pio version cpp
073f83989 fix pgi nuopc build issue
55b6096ec Merge pull request #3782 from ESMCI/jgfouca/more_e3sm_build_upgrades
c06710482 Merge pull request #3779 from jedwards4b/fix_bld_issues
9db73e464 Merge pull request #3777 from jedwards4b/add_cap_share_to_csm
e23562c59 Merge pull request #3754 from ESMCI/jonbob/update-seq-io-write-time
1b7eb3e18 Merge pull request #3765 from johnsonb-ucar/fix_python3_incompatibility_in_case
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/env_mach_specific.xsd
M scripts/Tools/Makefile
M scripts/Tools/preview_run
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/provenance.py
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.pio
M src/components/xcpl_comps_nuopc/xatm/src/atm_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xglc/src/glc_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xice/src/ice_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xlnd/src/lnd_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xocn/src/ocn_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xrof/src/rof_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xwav/src/wav_comp_nuopc.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/main/seq_io_mod.F90
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M src/externals/pio2/.github/workflows/autotools.yml
M src/externals/pio2/.github/workflows/cmake.yml
A src/externals/pio2/.github/workflows/cmake_ncint.yml
M src/externals/pio2/.github/workflows/strict_autotools.yml
M src/externals/pio2/.travis.yml