0.65.1

🐛 Bug Fix

• Remove NotImplementedError to allow for uploading Zarr assets to embargoed Dandisets #1540 (@kabilar @yarikoptic)

Authors: 2

• Kabilar Gunalan (@kabilar)
• Yaroslav Halchenko (@yarikoptic)

0.65.0

🚀 Enhancement

• Refactor some download code for readability + ensure that we checksum resumed downloads #1535 (@yarikoptic)

🐛 Bug Fix

• Fix PrivateAttr usage #1538 (@jwodder)
• add one photon to metadata dict #1532 (@bendichter)

🧪 Tests

• Ignore some type-checking errors under Python 3.13 #1539 (@jwodder)
• tests: update tests docker-compose with few changes from dandi-archive #1531 (@yarikoptic)
• Specify custom ulimit on nofiles to prevent infinite loop by billiard #1533 (@yarikoptic)
• Rename file key to codecov-action to files #1530 (@jwodder)
• gh-actions: Bump codecov/codecov-action from 4 to 5 #1529 (@dependabot[bot])

Authors: 4

• @dependabot[bot]
• Ben Dichter (@bendichter)
• John T. Wodder II (@jwodder)
• Yaroslav Halchenko (@yarikoptic)

0.64.0

🚀 Enhancement

• download: more consistent and exhaustive logging, new DANDI_DEVEL_AGGRESSIVE_RETRY mode, respect (?) Retry-After #1509 (@yarikoptic)

🐛 Bug Fix

• Include LINC API as a supported instance type for DANDI CLI #1527 ([email protected] @aaronkanzer)
• Enhance pynwb validation parsing to report the path within the file, fix pynwb typo #1513 (@rly)
• Drop claiming support and testing against EOL Python 3.8 #1504 (@asmacdo)
• ENH: log dandischema version and ensure we log (consistently) path for log messages in download #1499 (@yarikoptic)
• Fixup URI scheme rendering in --help output #1502 (@asmacdo)
• Adjust copyright year in documentation config #1504 (@yarikoptic)

🏠 Internal

• Use "cache_spec:False" in our copy_nwb_file helper while exporting NWB copy #1497 (@yarikoptic)

📝 Documentation

• fix: replace dandi-api link with dandi-archive #1524 (@asmacdo)

🧪 Tests

• Add xfail marks for some tests: test_nwb2asset_remote_asset, test_reextract_metadata, test_IteratorWithAggregation #1512 (@yarikoptic)
• Switch to python 3.9 in dev-deps CI matrix run since dev deps are now beginning to drop Python 3.8 which is EOL soon #1506 (@asmacdo)

Authors: 5

• @aaronkanzer
• Aaron Kanzer ([email protected])
• Austin Macdonald (@asmacdo)
• Ryan Ly (@rly)
• Yaroslav Halchenko (@yarikoptic)

0.63.1

🐛 Bug Fix

• Disallow hdmf 3.14.4, make organize to not parallelize for a single file, log information about all exceptions while reading metadata for organize #1496 (@yarikoptic)
• BF: use correct variable in exception upon unknown how to handle value of "species" #1482 (@yarikoptic)
• move: Immediately authenticate client after creation #1480 (@jwodder)

🧪 Tests

• Dump audit table to file specified by DANDI_TESTS_AUDIT_CSV envvar #1486 (@jwodder)
• Fix host used in minio URLs #1487 (@jwodder)

Authors: 2

• John T. Wodder II (@jwodder)
• Yaroslav Halchenko (@yarikoptic)

0.63.0

🚀 Enhancement

• Add --preserve-tree option to dandi download #1467 (@jwodder)

🐛 Bug Fix

• Fix handling of --preserve-tree for asset ID-only URLs #1476 (@jwodder)

📝 Documentation

• Fix one insignificant typo in CHANGELOG #1477 (@yarikoptic)

🧪 Tests

• Revert "Unbreak vcrpy install" #1472 (@jwodder)
• Unbreak vcrpy install #1471 (@jwodder)
• Further improvements to docker-compose.yml #1470 (@jwodder)
• Assorted Docker Compose improvements #1465 (@jwodder)
• Do not use mypy 1.11.0 #1466 (@jwodder)

Authors: 2

• John T. Wodder II (@jwodder)
• Yaroslav Halchenko (@yarikoptic)

0.62.4

🔩 Dependency Updates

• Revert "Temporarily restrict dandischema requirement to < 0.10.2" #1459 (@jwodder)

Authors: 1

• John T. Wodder II (@jwodder)

0.62.3

🔩 Dependency Updates

• Temporarily restrict dandischema requirement to < 0.10.2 #1458 (@jwodder)

Authors: 1

• John T. Wodder II (@jwodder)

0.62.2

🐛 Bug Fix

• Normalize path while requesting list of assets from the server #1454 (@yarikoptic)
• OPT+RF of zarr downloads: do not wait for full files listing + compute %done from total zarr size #1443 (@yarikoptic)
• Separate datetime components in logfile names with punctuation #1445 (@jwodder)

Authors: 2

• John T. Wodder II (@jwodder)
• Yaroslav Halchenko (@yarikoptic)

0.62.1

🐛 Bug Fix

• Rewind filehandle request bodies before retrying requests #1444 (@jwodder)
• Slight tune up to formatting of examples etc to harmonize appearance/make shorter #1439 (@yarikoptic)
• Fix spelling of netlify and insstance #1433 (@rly @yarikoptic)

🏠 Internal

• ENH: add/use codespell-project/codespell-problem-matcher to annotate PRs on where typos added #1429 (@yarikoptic)

🧪 Tests

• ENH: add timeout of 300 (5 minutes) to any test running #1440 (@yarikoptic)

Authors: 3

• John T. Wodder II (@jwodder)
• Ryan Ly (@rly)
• Yaroslav Halchenko (@yarikoptic)

0.62.0

🚀 Enhancement

• Convert DOI URLs in related_publications to related resources #1417 (@jwodder)

🐛 Bug Fix

• Adjust tests for the added email requirement for contact person #1438 (@candleindark @yarikoptic)
• Add DJANGO_DANDI_DEV_EMAIL env var to archive tests #1436 (@jjnesbitt)
• clarify resource identifier docs #1437 (@asmacdo)

🧪 Tests

• Fix spelling of --scheduled option used in scheduled tests #1428 (@jwodder)
• Xfail flaky ontobee tests, unless running daily tests #1423 (@jwodder)

Authors: 5

• Austin Macdonald (@asmacdo)
• Isaac To (@candleindark)
• Jacob Nesbitt (@jjnesbitt)
• John T. Wodder II (@jwodder)
• Yaroslav Halchenko (@yarikoptic)