can not find phenix.cryo_fit

[shiyu-wangbyte]

I have installed it succcessfully, but can not find it in my path.

The message is :
which: no phenix.cryo_fit in (/usr/local/phenix-1.20.1-4487/build/bin:/home/shiyu/soft/text/cryo_fit/bin:/usr/local/phenix-1.20.1-4487/build/bin:/soft/gromacs/bin:/home/shiyu/soft/cryo_fit/bin:/home/shiyu/anaconda3/bin:/home/shiyu/anaconda3/condabin:/home/shiyu/bin:/usr/local/bin:/usr/bin:/bin:/snap/bin)
Error in sys.excepthook:
Traceback (most recent call last):
File "/usr/local/phenix-1.20.1-4487/modules/phenix/wxGUI2/App.py", line 898, in _excepthook
Error.show_exception_dialog(type, value, traceback)
File "/usr/local/phenix-1.20.1-4487/modules/phenix/wxGUI2/Error.py", line 76, in show_exception_dialog
if (app.bug_timer.IsRunning() is False):
AttributeError: 'PhenixApp' object has no attribute 'bug_timer'

However: I have installed it wvery well?

Installing command is :
python /usr/local/phenix-1.20.1-4487/modules/cryo_fit/files_for_steps/0_install_cryo_fit/install_cryo_fit.py /home/shiyu/soft/cryo_fit_install-master/gromacs-4.5.5_cryo_fit.zip /home/shiyu/soft/

message:

'''
GROMACS is installed under /home/shiyu/soft/cryo_fit.
Make sure to update your PATH and MANPATH to find the
programs and unix manual pages, and possibly LD_LIBRARY_PATH
or /etc/ld.so.conf if you are using dynamic libraries.

Please run "make tests" now to verify your installation.

If you want links to the executables in /usr/local/bin,
you can issue "make links" now.
make[3]: Leaving directory '/home/shiyu/soft/cryo_fit/source_keep_this_otherwise_segfault/gromacs-4.5.5_cryo_fit'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/home/shiyu/soft/cryo_fit/source_keep_this_otherwise_segfault/gromacs-4.5.5_cryo_fit'
make[1]: Leaving directory '/home/shiyu/soft/cryo_fit/source_keep_this_otherwise_segfault/gromacs-4.5.5_cryo_fit'
#########################################################################################################

Cryo_fit will check whether the installation was done without any error.

Was your installation ended with this kind of message?
..."GROMACS is installed under ...
"Make sure to update your PATH and MANPATH to find the"
..."If you want links to the executables in /usr/local/bin,
you can issue "make links" now.
make[2]: Nothing to be done for `install-data-am'."

Check whether /home/shiyu/soft/cryo_fit/bin/mdrun exists.
Successful installation because cryo_fit can find /home/shiyu/soft/cryo_fit/bin/mdrun
~/.bashrc exists

cryo_fit_installation will add

export PATH="/home/shiyu/soft/cryo_fit/bin":$PATH # added by cryo_fit installation

to ~/.bashrc

Please source /root/.bashrc or open a new terminal so that /root/.bashrc can recognize cryo_fit path (which is /home/shiyu/soft/cryo_fit)

Total cryo_fit installation
finished in 6.93 minutes (wallclock).
'''

Can you tell me why the command phenix.cryo_fit is not generated?