tests.yaml

name: Tests

on:
  push:
    branches: [ master ]
  pull_request:
    branches: [ master ]
  schedule:
    - cron:  '0 0 * * 0'

concurrency:
  group: ${{ github.workflow }}-${{ github.head_ref || github.ref }}
  cancel-in-progress: true

env:
  PIP_NO_BINARY: rasterio
  DEBIAN_FRONTEND: noninteractive

jobs:
  linting:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
      - uses: actions/setup-python@v4
      - uses: pre-commit/action@v3.0.0

  docker_tests:
    needs: linting
    runs-on: ubuntu-latest
    name: Docker | GDAL=${{ matrix.gdal-version }} | python=${{ matrix.python-version }} | rasterio${{ matrix.rasterio-version }} | scipy ${{ matrix.run-with-scipy }}
    container: ghcr.io/osgeo/gdal:ubuntu-full-${{ matrix.gdal-version }}
    strategy:
      fail-fast: false
      matrix:
        python-version: ['3.9', '3.10', '3.11']
        rasterio-version: ['']
        xarray-version: ['']
        pandas-version: ['']
        run-with-scipy: ['YES']
        gdal-version: ['3.6.4']
        include:
          - python-version: '3.9'
            rasterio-version: ''
            xarray-version: '==0.17'
            pandas-version: '<2'
            run-with-scipy: 'YES'
            gdal-version: '3.4.3'
          - python-version: '3.9'
            rasterio-version: '==1.2.1'
            xarray-version: ''
            pandas-version: ''
            run-with-scipy: 'YES'
            gdal-version: '3.5.3'
          - python-version: '3.9'
            rasterio-version: ''
            xarray-version: ''
            pandas-version: ''
            run-with-scipy: 'NO'
            gdal-version: '3.5.3'
    steps:
      - uses: actions/checkout@v3

      - name: Remove unused apt repo
        if: ${{ matrix.gdal-version }} == '3.5.3'
        run: |
          rm -f /etc/apt/sources.list.d/apache-arrow.sources

      - name: Update
        run: |
          apt-get update
          apt-get -y install software-properties-common
          add-apt-repository -y ppa:deadsnakes/ppa
          apt-get update

      - name: Set up Python ${{ matrix.python-version }}
        run: |
          apt-get install -y --no-install-recommends \
            python${{ matrix.python-version }} \
            python${{ matrix.python-version }}-dev \
            python${{ matrix.python-version }}-venv \
            python3-pip \
            g++
          chown -R $(whoami) /github/home/

      - name: Install dependencies
        run: |
          python${{ matrix.python-version }} -m venv testenv
          . testenv/bin/activate
          python -m pip install --upgrade pip
          export INSTALL_DEPS='rasterio${{ matrix.rasterio-version }} xarray${{ matrix.xarray-version }} pandas${{ matrix.pandas-version }}'
          [ "${{ matrix.run-with-scipy }}" = "YES" ] && export INSTALL_DEPS="${INSTALL_DEPS} scipy"
          python -m pip install $INSTALL_DEPS
          python -m pip install -e .[dev,doc]

      - name: run tests
        run: |
          . testenv/bin/activate
          python -m pytest --cov-report term-missing --cov=rioxarray --cov-report xml

      - uses: codecov/codecov-action@v3


  conda_test:
    needs: linting
    name: ${{ matrix.os }} | ${{ matrix.python-version }} | rasterio-${{ matrix.rasterio-version }} | scipy ${{ matrix.run-with-scipy }}
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: true
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ['3.9', '3.10', '3.11']
        rasterio-version: ['*']
        xarray-version: ['*']
        run-with-scipy: ['YES']

    steps:
      - uses: actions/checkout@v3

      - name: Setup Conda
        uses: s-weigand/setup-conda@v1
        with:
          python-version: ${{ matrix.python-version }}
          conda-channels: conda-forge

      - name: Install Env
        shell: bash
        run: |
          conda config --prepend channels conda-forge
          conda config --set channel_priority strict
          export INSTALL_DEPS='python=${{ matrix.python-version }} rasterio=${{ matrix.rasterio-version }} xarray=${{ matrix.xarray-version }} pyproj netcdf4 dask pandoc'
          [ "${{ matrix.run-with-scipy }}" = "YES" ] && export INSTALL_DEPS="${INSTALL_DEPS} scipy"
          conda create -n test $INSTALL_DEPS
          source activate test
          python -m pip install -e .[dev,doc]

      - name: Check and Log Environment
        shell: bash
        run: |
          source activate test
          python -V
          python -c "import rioxarray; rioxarray.show_versions();"
          conda info

      - name: pylint
        if: matrix.python-version == '3.9'
        shell: bash
        run: |
          source activate test
          pylint rioxarray/

      - name: mypy
        shell: bash
        if: matrix.python-version == '3.9'
        run: |
          source activate test
          mypy rioxarray/

      - name: Test
        shell: bash
        run: |
          source activate test
          pytest --cov-report term-missing --cov=rioxarray --cov-report xml

      - name: Test Build docs
        shell: bash
        if: contains(matrix.os, 'ubuntu')
        run: |
          source activate test
          sphinx-build -b html docs/ docs/_build/

      - uses: codecov/codecov-action@v3


  test_latest:
    needs: linting
    name: Test latest dependencies
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3

      - name: Setup Conda
        uses: s-weigand/setup-conda@v1
        with:
          python-version: 3.9
          conda-channels: conda-forge

      - name: Install Env
        shell: bash
        run: |
          conda config --prepend channels conda-forge
          conda config --set channel_priority strict
          conda create -n test python=3.9 proj libgdal cython netcdf4
          source activate test
          python -m pip install \
            --index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple \
            --no-deps --pre --upgrade \
            numpy \
            pandas \
            scipy;
          python -m pip install --upgrade \
            git+https://github.com/dask/dask.git@main \
            git+https://github.com/dask/distributed.git@main \
            git+https://github.com/mapbox/rasterio.git@main \
            git+https://github.com/pyproj4/pyproj.git@main \
            git+https://github.com/pydata/xarray.git@main;
          python -m pip install -e .[all]

      - name: Check and Log Environment
        shell: bash
        run: |
          source activate test
          python -V
          python -c "import rioxarray; rioxarray.show_versions();"
          conda info

      - name: Test
        shell: bash
        run: |
          source activate test
          pytest --cov-report term-missing --cov=rioxarray --cov-report xml