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1. computational-cell-analytics/micro-sam computational-cell-analytics/micro-sam Public

   Segment Anything for Microscopy

   Jupyter Notebook 368 47

2. torch-em torch-em Public

   Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.

   Jupyter Notebook 76 22

3. elf elf Public

   Utils and convenience functions for large-scale bio-image analysis.

   Python 48 18

4. z5 z5 Public

   Lightweight C++ and Python interface for datasets in zarr and N5 format

   C++ 111 27

5. cluster_tools cluster_tools Public

   Distributed segmentation for bio-image-analysis

   Python 36 14

6. DerThorsten/nifty DerThorsten/nifty Public

   A nifty library for graph based image segmentation.

   C++ 43 21