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Sample names inherit part of illumina's nomenclature for index and lane #87

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MattBashton opened this issue Jan 14, 2021 · 0 comments
Open

Sample names inherit part of illumina's nomenclature for index and lane #87

MattBashton opened this issue Jan 14, 2021 · 0 comments

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@MattBashton
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MattBashton commented Jan 14, 2021 •
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We have fastq files which look like COG-ID_S106_L001_R1_001.fastq.gz coming off our illumina hardware, however the pipeline will take the index part S\d+ and lane L\d+ end up appended to the COG-ID in final output, would be nice to remove these so input filename renaming is not required.
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@MattBashton