HISTORY

v0.13:
 * ARTIC fork

v0.12: 
 * Update to nanopolish v0.8.4 for Albacore 2.0+ support:
     run nanopolish -d /path/to/fast5 input.fasta before zibra.py minion

v0.11-dev:
 * Add stringent pipeline

v0.11 (25th July 2017):
 * Revert back to Ryan Wick's porechop repo as --untrimmed now implemented
 * New script: align_trim_fasta.py and reconstitute.py as basis for more
   principled demultiplexing (align first, then trim to known amplicon end
   points +/- 40 bases) to help prevent chimeric reads resulting in 
   incorrect barcode identification

v0.10 (15th July 2017):
 * Better handling of confident deletions (previously ignored, now N-masked)
 * Update to nanopolish HEAD
 * Fixes to support latest nanopolish VCF format changes
 * Ability to choose higher values of max-haplotypes to support more divergent references

v0.9:
 * New command line interface zibra.py to ease extraction and demultiplexing with Albacore and multiple groups

v0.8:
 * Track latest Porechop with better adaptor trimming

v0.7:
 * Add Illumina wrapper scripts

v0.6:
 * Update poretools

v0.5:
 * Update nanopolish to latest HEAD - to fix Albacore 1.1 support (7de633d01cc35a58e5537af5dd1024ae0040d15c)
 * Add Lassa virus scheme

v0.4:
 * Update nanopolish to latest HEAD - aaaf90beb4efe37243c651e62fcfd11374fe2176 for Albacore 1 support
 * Initial support for Yellow Fever (500 and 1000 bp schemes)
  * Move to poretools for extraction with named basecaller

v0.3:
 * add Porechop

v0.2:
 * update nanopolish to 0.6 - adds default support for various nanopore models
 * update samtools to 1.4