v2.1.0

Add GUI support for new version

v2.0.4

• Log peptide sequences that are too long
• bug fix for sequences > 60 AA
• bug fix non-resolved modifications
• psm_utils integration
• pygam default calibrator
• additional support transfer learning
• code refractoring of feature extraction
• prediction library support
• piecewise linear calibration support

v1.1.2

Changed

• Made Gooey an optional dependency (facilitates install on Linux). Install the optional
  dependencies for the graphical user interface with pip install deeplc[gui]

v1.1.1

Added

• New native Python GUI, based on the Gooey package
• New standalone installer for Windows using PyInstaller and Inno Setup
• Added deeplc-gui entrypoint to start GUI from the command line

Changed

• CLI: Restructured help message
• Made DeepLC class API docstring consistent with CLI help message
• Docs: Moved dict_divider and split_cal explanation to README Q&A section.
• CI: Only run tests on commits to master or from a PR
• Refactoring: Cleaned up __main__.py
• Logging: Changed some loggings from DEBUG to INFO level, some from WARNING to INFO or
  DEBUG level

Removed

• Removed Java-based GUI in favor of new Python-based GUI

Fixed

• If run through CLI/GUI, all Tensorflow warnings are now fully suppressed
• Added --legacy_calibration CLI option to allow for old piecewise linear calibration
  while new pyGAM calibration method is default. --legacy_calibration is mutually
  exclusive with --pygam_calibration.

v1.0.1

• Make version compatible with pip release

v1.0.0

• Make version compatible with pip release

[1.0] - 2022-02-23

• Make pygam the default calibration method

v0.2.2

• Bug fix where split_cal was not correctly passed
• CMD support for pygam calibration

v0.2.1

• Scikit-learn and pygam dependency in setup

v0.2.0

• Bug fix duplicate peptide+mod for DeepCALLC
• New feature DeepCALLC

v0.1.39

• Version bump