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TyperError: 'NoneType' on self.postgis_geometry_column = str(row['f_geometry_column']) #270

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didikw opened this issue Dec 28, 2021 · 1 comment
Open

TyperError: 'NoneType' on self.postgis_geometry_column = str(row['f_geometry_column']) #270

didikw opened this issue Dec 28, 2021 · 1 comment

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@didikw
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didikw commented Dec 28, 2021 •
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I was run this command inside activated environtment py3:
inside directory : /usr/lib/ckan/default/src/ckanext-spatial
$python bin/ckan_pycsw.py load -p /etc/ckan/default/pycsw.cfg -u https://blablabla.org

got response:

bin/ckan_pycsw.py:248: DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead.
config = SafeConfigParser()
creating new engine: postgresql://user:[email protected]/ckan_default
binding ORM to existing database
PostgreSQL+PostGIS+Native not picked up: records
Traceback (most recent call last):
File "/usr/lib/ckan/default/lib/python3.8/site-packages/pycsw-3.0.dev0-py3.8.egg/pycsw/core/repository.py", line 160, in init
self.postgis_geometry_column = str(row['f_geometry_column'])
TypeError: 'NoneType' object is not subscriptable
setting repository queryables
Started gathering CKAN datasets identifiers: 2021-12-28 12:53:36.181253
Gather finished (0 datasets): 2021-12-28 12:53:36.206973

---------------- >>>> Please what is the problem? <<<<-----------------------

I found this on line 78 (i do some adjustmen to the query)
====================/usr/lib/ckan/default/src/ckanext-spatial/bin/ckan_pycsw.py =====================
query = 'api/3/action/datastore_search?q={"fl":"id,metadata_modified,extras_harvest_object_id,extras_metadata_source", "q":"harvest_object_id:[\"\" TO *]", "limit":1000, "start":%s}'
#query = 'api/3/action/datastore_search?resource_id=_table_metadata'
#query = 'api/3/action/package_search?json={"fl":"id,metadata_modified,extras_harvest_object_id,extras_metadata_source", "q":"harvest_object_id:[\"\" TO *]", "limit":1000, "start":%s}'
#query = 'api/search/dataset?qjson={"fl":"id,metadata_modified,extras_harvest_object_id,extras_metadata_source", "q":"harvest_object_id:[\"\" TO *]", "limit":1000, "start":%s}'

start = 0

gathered_records = {}

while True:
    url = ckan_url + query % start

=================================== @smellman @morty @kindly

and another try after delete table records and repeat setup command
$python bin/ckan_pycsw.py setup -p /etc/ckan/default/pycsw.cfg

then load command
$python bin/ckan_pycsw.py load -p /etc/ckan/default/pycsw.cfg -u https://blablabla.org
gets this:

/usr/lib/ckan/default/lib/python3.8/site-packages/sqlalchemy/dialects/postgresql/base.py:3233: SAWarning: Did not recognize type 'geometry' of column 'wkb_geometry'
util.warn(
setting repository queryables
Started gathering CKAN datasets identifiers: 2021-12-28 13:57:13.090627
Gather finished (0 datasets): 2021-12-28 13:57:13.116979
@didikw
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didikw commented Dec 28, 2021

I run on postgre 10 and postgis 2.4

#select * from geometry_columns;
f_table_catalog | f_table_schema | f_table_name | f_geometry_column | coord_dimension | srid | type
-----------------+----------------+----------------+-------------------+-----------------+------+----------
ckan_default | public | package_extent | the_geom | 2 | 4326 | GEOMETRY
ckan_default | public | records | wkb_geometry | 2 | 4326 | GEOMETRY

and wkb_geometry comes from ckan_pycsw.py setup command

CREATE TABLE "public"."Untitled" (
"identifier" text COLLATE "pg_catalog"."default" NOT NULL,
"typename" text COLLATE "pg_catalog"."default" NOT NULL,
"schema" text COLLATE "pg_catalog"."default" NOT NULL,
"mdsource" text COLLATE "pg_catalog"."default" NOT NULL,
"insert_date" text COLLATE "pg_catalog"."default" NOT NULL,
"xml" varchar COLLATE "pg_catalog"."default" NOT NULL,
"anytext" text COLLATE "pg_catalog"."default" NOT NULL,
"metadata" varchar COLLATE "pg_catalog"."default",
"metadata_type" text COLLATE "pg_catalog"."default" NOT NULL,
"language" text COLLATE "pg_catalog"."default",
"type" text COLLATE "pg_catalog"."default",
"title" text COLLATE "pg_catalog"."default",
"title_alternate" text COLLATE "pg_catalog"."default",
"abstract" text COLLATE "pg_catalog"."default",
"keywords" text COLLATE "pg_catalog"."default",
"keywordstype" text COLLATE "pg_catalog"."default",
"parentidentifier" text COLLATE "pg_catalog"."default",
"relation" text COLLATE "pg_catalog"."default",
"time_begin" text COLLATE "pg_catalog"."default",
"time_end" text COLLATE "pg_catalog"."default",
"topicategory" text COLLATE "pg_catalog"."default",
"resourcelanguage" text COLLATE "pg_catalog"."default",
"creator" text COLLATE "pg_catalog"."default",
"publisher" text COLLATE "pg_catalog"."default",
"contributor" text COLLATE "pg_catalog"."default",
"organization" text COLLATE "pg_catalog"."default",
"securityconstraints" text COLLATE "pg_catalog"."default",
"accessconstraints" text COLLATE "pg_catalog"."default",
"otherconstraints" text COLLATE "pg_catalog"."default",
"date" text COLLATE "pg_catalog"."default",
"date_revision" text COLLATE "pg_catalog"."default",
"date_creation" text COLLATE "pg_catalog"."default",
"date_publication" text COLLATE "pg_catalog"."default",
"date_modified" text COLLATE "pg_catalog"."default",
"format" text COLLATE "pg_catalog"."default",
"source" text COLLATE "pg_catalog"."default",
"crs" text COLLATE "pg_catalog"."default",
"geodescode" text COLLATE "pg_catalog"."default",
"denominator" text COLLATE "pg_catalog"."default",
"distancevalue" text COLLATE "pg_catalog"."default",
"distanceuom" text COLLATE "pg_catalog"."default",
"wkt_geometry" text COLLATE "pg_catalog"."default",
"servicetype" text COLLATE "pg_catalog"."default",
"servicetypeversion" text COLLATE "pg_catalog"."default",
"operation" text COLLATE "pg_catalog"."default",
"couplingtype" text COLLATE "pg_catalog"."default",
"operateson" text COLLATE "pg_catalog"."default",
"operatesonidentifier" text COLLATE "pg_catalog"."default",
"operatesoname" text COLLATE "pg_catalog"."default",
"degree" text COLLATE "pg_catalog"."default",
"classification" text COLLATE "pg_catalog"."default",
"conditionapplyingtoaccessanduse" text COLLATE "pg_catalog"."default",
"lineage" text COLLATE "pg_catalog"."default",
"responsiblepartyrole" text COLLATE "pg_catalog"."default",
"specificationtitle" text COLLATE "pg_catalog"."default",
"specificationdate" text COLLATE "pg_catalog"."default",
"specificationdatetype" text COLLATE "pg_catalog"."default",
"platform" text COLLATE "pg_catalog"."default",
"instrument" text COLLATE "pg_catalog"."default",
"sensortype" text COLLATE "pg_catalog"."default",
"cloudcover" text COLLATE "pg_catalog"."default",
"bands" text COLLATE "pg_catalog"."default",
"links" text COLLATE "pg_catalog"."default",
"ckan_id" text COLLATE "pg_catalog"."default",
"ckan_modified" text COLLATE "pg_catalog"."default",
"anytext_tsvector" tsvector,
"wkb_geometry" "public"."geometry", <<< ------------------------------------------------------
PRIMARY KEY ("identifier")
)
;

ALTER TABLE "public"."Untitled"
OWNER TO "ckan_default";

CREATE INDEX "fts_gin_idx" ON "public"."Untitled" USING gin (
"anytext_tsvector" "pg_catalog"."tsvector_ops"
);

CREATE INDEX "ix_records_abstract" ON "public"."Untitled" USING btree (
"abstract" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_accessconstraints" ON "public"."Untitled" USING btree (
"accessconstraints" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_bands" ON "public"."Untitled" USING btree (
"bands" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_ckan_id" ON "public"."Untitled" USING btree (
"ckan_id" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_classification" ON "public"."Untitled" USING btree (
"classification" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_cloudcover" ON "public"."Untitled" USING btree (
"cloudcover" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_conditionapplyingtoaccessanduse" ON "public"."Untitled" USING btree (
"conditionapplyingtoaccessanduse" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_contributor" ON "public"."Untitled" USING btree (
"contributor" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_couplingtype" ON "public"."Untitled" USING btree (
"couplingtype" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_creator" ON "public"."Untitled" USING btree (
"creator" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_crs" ON "public"."Untitled" USING btree (
"crs" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_date" ON "public"."Untitled" USING btree (
"date" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_date_creation" ON "public"."Untitled" USING btree (
"date_creation" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_date_modified" ON "public"."Untitled" USING btree (
"date_modified" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_date_publication" ON "public"."Untitled" USING btree (
"date_publication" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_date_revision" ON "public"."Untitled" USING btree (
"date_revision" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_degree" ON "public"."Untitled" USING btree (
"degree" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_denominator" ON "public"."Untitled" USING btree (
"denominator" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_distanceuom" ON "public"."Untitled" USING btree (
"distanceuom" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_distancevalue" ON "public"."Untitled" USING btree (
"distancevalue" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_format" ON "public"."Untitled" USING btree (
"format" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_geodescode" ON "public"."Untitled" USING btree (
"geodescode" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_insert_date" ON "public"."Untitled" USING btree (
"insert_date" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_instrument" ON "public"."Untitled" USING btree (
"instrument" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_keywords" ON "public"."Untitled" USING btree (
"keywords" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_keywordstype" ON "public"."Untitled" USING btree (
"keywordstype" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_language" ON "public"."Untitled" USING btree (
"language" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_lineage" ON "public"."Untitled" USING btree (
"lineage" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_links" ON "public"."Untitled" USING btree (
"links" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_mdsource" ON "public"."Untitled" USING btree (
"mdsource" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_operateson" ON "public"."Untitled" USING btree (
"operateson" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_operatesoname" ON "public"."Untitled" USING btree (
"operatesoname" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_operatesonidentifier" ON "public"."Untitled" USING btree (
"operatesonidentifier" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_operation" ON "public"."Untitled" USING btree (
"operation" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_organization" ON "public"."Untitled" USING btree (
"organization" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_otherconstraints" ON "public"."Untitled" USING btree (
"otherconstraints" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_parentidentifier" ON "public"."Untitled" USING btree (
"parentidentifier" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_platform" ON "public"."Untitled" USING btree (
"platform" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_publisher" ON "public"."Untitled" USING btree (
"publisher" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_relation" ON "public"."Untitled" USING btree (
"relation" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_resourcelanguage" ON "public"."Untitled" USING btree (
"resourcelanguage" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_responsiblepartyrole" ON "public"."Untitled" USING btree (
"responsiblepartyrole" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_schema" ON "public"."Untitled" USING btree (
"schema" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_securityconstraints" ON "public"."Untitled" USING btree (
"securityconstraints" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_sensortype" ON "public"."Untitled" USING btree (
"sensortype" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_servicetype" ON "public"."Untitled" USING btree (
"servicetype" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_servicetypeversion" ON "public"."Untitled" USING btree (
"servicetypeversion" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_source" ON "public"."Untitled" USING btree (
"source" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_specificationdate" ON "public"."Untitled" USING btree (
"specificationdate" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_specificationdatetype" ON "public"."Untitled" USING btree (
"specificationdatetype" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_specificationtitle" ON "public"."Untitled" USING btree (
"specificationtitle" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_time_begin" ON "public"."Untitled" USING btree (
"time_begin" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_time_end" ON "public"."Untitled" USING btree (
"time_end" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_title" ON "public"."Untitled" USING btree (
"title" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_title_alternate" ON "public"."Untitled" USING btree (
"title_alternate" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_topicategory" ON "public"."Untitled" USING btree (
"topicategory" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_type" ON "public"."Untitled" USING btree (
"type" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "ix_records_typename" ON "public"."Untitled" USING btree (
"typename" COLLATE "pg_catalog"."default" "pg_catalog"."text_ops" ASC NULLS LAST
);

CREATE INDEX "wkb_geometry_idx" ON "public"."Untitled" USING gist (
"wkb_geometry" "public"."gist_geometry_ops_2d"
);

CREATE TRIGGER "ftsupdate" BEFORE INSERT OR UPDATE ON "public"."Untitled"
FOR EACH ROW
EXECUTE PROCEDURE "pg_catalog"."tsvector_update_trigger"('anytext_tsvector', 'pg_catalog.english', 'anytext');

CREATE TRIGGER "records_update_geometry" BEFORE INSERT OR UPDATE ON "public"."Untitled"
FOR EACH ROW
EXECUTE PROCEDURE "public"."records_update_geometry"();

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