From b921158792456f42cc94c21a3bd246921d1fc57d Mon Sep 17 00:00:00 2001 From: Toshiki Takeuchi Date: Wed, 16 Oct 2024 14:22:13 +0900 Subject: [PATCH 1/3] Replace release date --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index cbafd7f..0d00ac9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## [0.5.0] - TBD +## [0.5.0] - 2024-10-16 ### BREAKING From 9664eb54206103c057ecb192c4d406f22bcedb7b Mon Sep 17 00:00:00 2001 From: Toshiki Takeuchi Date: Wed, 16 Oct 2024 14:22:32 +0900 Subject: [PATCH 2/3] Prepare for next development iteration (0.5.1-SNAPSHOT) --- project.clj | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/project.clj b/project.clj index 92ddb46..ca5adfc 100644 --- a/project.clj +++ b/project.clj @@ -1,4 +1,4 @@ -(defproject clj-hgvs "0.5.0" +(defproject clj-hgvs "0.5.1-SNAPSHOT" :description "Clojure(Script) library for handling HGVS" :url "https://github.com/chrovis/clj-hgvs" :license {:name "Apache License, Version 2.0" From f9983714a02f44973e04e4506ff8d6af2a8931e2 Mon Sep 17 00:00:00 2001 From: Toshiki Takeuchi Date: Wed, 16 Oct 2024 14:24:57 +0900 Subject: [PATCH 3/3] Update URL of HGVS Nomenclature --- README.md | 2 +- src/clj_hgvs/core.cljc | 2 +- src/clj_hgvs/mutation.cljc | 4 ++-- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 083df28..009b734 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,7 @@ [![build](https://github.com/chrovis/clj-hgvs/actions/workflows/build.yml/badge.svg)](https://github.com/chrovis/clj-hgvs/actions/workflows/build.yml) [![codecov](https://codecov.io/gh/chrovis/clj-hgvs/branch/master/graph/badge.svg)](https://codecov.io/gh/chrovis/clj-hgvs) -Clojure(Script) library for handling [HGVS](http://varnomen.hgvs.org/). +Clojure(Script) library for handling [HGVS](https://hgvs-nomenclature.org/). ## Features diff --git a/src/clj_hgvs/core.cljc b/src/clj_hgvs/core.cljc index 6060556..e6e31f4 100644 --- a/src/clj_hgvs/core.cljc +++ b/src/clj_hgvs/core.cljc @@ -1,5 +1,5 @@ (ns clj-hgvs.core - "Main functions for handling HGVS. See http://varnomen.hgvs.org/ for the + "Main functions for handling HGVS. See https://hgvs-nomenclature.org/ for the detail HGVS nomenclature." (:refer-clojure :exclude [== #?(:clj format)]) (:require #?(:clj [clojure.pprint :as pp]) diff --git a/src/clj_hgvs/mutation.cljc b/src/clj_hgvs/mutation.cljc index af01791..89e1b54 100644 --- a/src/clj_hgvs/mutation.cljc +++ b/src/clj_hgvs/mutation.cljc @@ -221,7 +221,7 @@ ;;; DNA mutations -;; See http://varnomen.hgvs.org/bg-material/standards#dna +;; See https://hgvs-nomenclature.org/stable/background/standards/#dna (s/def ::dna-bases (s/and string? #(re-matches #"[ACGTBDHKMNRSVWY]+" %))) @@ -879,7 +879,7 @@ ;;; RNA mutations -;; See http://varnomen.hgvs.org/bg-material/standards#rna +;; See https://hgvs-nomenclature.org/stable/background/standards/#rna (s/def ::rna-bases (s/and string? #(re-matches #"[acgubdhkmnrsvwy]+" %)))