GitLab Messages for Reviews Error #2892
Comments
sgoggins
added
bug
|
Basically the same error on restart after the GitHub outages just now. Traceback (most recent call last):
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 451, in trace_task
R = retval = fun(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 734, in __protected_call__
return self.run(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/augur/augur/tasks/gitlab/issues_task.py", line 224, in collect_gitlab_issue_comments
process_gitlab_issue_messages(comments, f"{owner}/{repo}: Gitlab issue messages task", repo_id, logger, session)
File "/home/ubuntu/github/augur/augur/tasks/gitlab/issues_task.py", line 287, in process_gitlab_issue_messages
issues = session.session.query(Issue).filter(Issue.repo_id == repo_id).all()
^^^^^^^^^^^^^^^
AttributeError: 'Session' object has no attribute 'session'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1969, in _exec_single_context
self.dialect.do_execute(
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/default.py", line 922, in do_execute
cursor.execute(statement, parameters)
psycopg2.errors.UndefinedFunction: operator does not exist: character varying = integer[]
LINE 3: WHERE augur_data.repo.repo_git = ARRAY[59,58,57,56,55,54,53,...
^
HINT: No operator matches the given name and argument types. You might need to add explicit type casts.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 468, in trace_task
I, R, state, retval = on_error(task_request, exc, uuid)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 379, in on_error
R = I.handle_error_state(
^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 178, in handle_error_state
return {
^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 231, in handle_failure
task.on_failure(exc, req.id, req.args, req.kwargs, einfo)
File "/home/ubuntu/github/augur/augur/tasks/init/celery_app.py", line 105, in on_failure
self.augur_handle_task_failure(exc, task_id, repo_git, "core_task_failure")
File "/home/ubuntu/github/augur/augur/tasks/init/celery_app.py", line 88, in augur_handle_task_failure
repo = session.query(Repo).filter(Repo.repo_git == repo_git).one()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/query.py", line 2798, in one
return self._iter().one() # type: ignore
^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/query.py", line 2847, in _iter
result: Union[ScalarResult[_T], Result[_T]] = self.session.execute(
^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/session.py", line 2306, in execute
return self._execute_internal(
^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/session.py", line 2188, in _execute_internal
result: Result[Any] = compile_state_cls.orm_execute_statement(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/context.py", line 293, in orm_execute_statement
result = conn.execute(
^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1416, in execute
return meth(
^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/sql/elements.py", line 516, in _execute_on_connection
return connection._execute_clauseelement(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1639, in _execute_clauseelement
ret = self._execute_context(
^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1848, in _execute_context
return self._exec_single_context(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1988, in _exec_single_context
self._handle_dbapi_exception(
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 2343, in _handle_dbapi_exception
raise sqlalchemy_exception.with_traceback(exc_info[2]) from e
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1969, in _exec_single_context
self.dialect.do_execute(
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/default.py", line 922, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.ProgrammingError: (psycopg2.errors.UndefinedFunction) operator does not exist: character varying = integer[]
LINE 3: WHERE augur_data.repo.repo_git = ARRAY[59,58,57,56,55,54,53,...
^
HINT: No operator matches the given name and argument types. You might need to add explicit type casts.
[SQL: SELECT augur_data.repo.repo_id AS augur_data_repo_repo_id, augur_data.repo.repo_group_id AS augur_data_repo_repo_group_id, augur_data.repo.repo_git AS augur_data_repo_repo_git, augur_data.repo.repo_path AS augur_data_repo_repo_path, augur_data.repo.repo_name AS augur_data_repo_repo_name, augur_data.repo.repo_added AS augur_data_repo_repo_added, augur_data.repo.repo_type AS augur_data_repo_repo_type, augur_data.repo.url AS augur_data_repo_url, augur_data.repo.owner_id AS augur_data_repo_owner_id, augur_data.repo.description AS augur_data_repo_description, augur_data.repo.primary_language AS augur_data_repo_primary_language, augur_data.repo.created_at AS augur_data_repo_created_at, augur_data.repo.forked_from AS augur_data_repo_forked_from, augur_data.repo.updated_at AS augur_data_repo_updated_at, augur_data.repo.repo_archived_date_collected AS augur_data_repo_repo_archived_date_collected, augur_data.repo.repo_archived AS augur_data_repo_repo_archived, augur_data.repo.tool_source AS augur_data_repo_tool_source, augur_data.repo.tool_version AS augur_data_repo_tool_version, augur_data.repo.data_source AS augur_data_repo_data_source, augur_data.repo.data_collection_date AS augur_data_repo_data_collection_date
FROM augur_data.repo
WHERE augur_data.repo.repo_git = %(repo_git_1)s]
[parameters: {'repo_git_1': [59, 58, 57, 56, 55, 54, 53, 52, 51, 50, 49, 48, 47, 46, 45, 44, 43, 42, 41, 40, 39, 38, 37, 36, 35, 34, 33, 32, 31, 30, 29, 28, 27, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1]}]
(Background on this error at: https://sqlalche.me/e/20/f405)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1969, in _exec_single_context
self.dialect.do_execute(
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/default.py", line 922, in do_execute
cursor.execute(statement, parameters)
psycopg2.errors.UndefinedFunction: operator does not exist: character varying = integer[]
LINE 3: WHERE augur_data.repo.repo_git = ARRAY[59,58,57,56,55,54,53,...
^
HINT: No operator matches the given name and argument types. You might need to add explicit type casts.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/billiard/pool.py", line 362, in workloop
result = (True, prepare_result(fun(*args, **kwargs)))
^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 649, in fast_trace_task
R, I, T, Rstr = tasks[task].__trace__(
^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 572, in trace_task
I, _, _, _ = on_error(task_request, exc, uuid)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 379, in on_error
R = I.handle_error_state(
^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 178, in handle_error_state
return {
^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 231, in handle_failure
task.on_failure(exc, req.id, req.args, req.kwargs, einfo)
File "/home/ubuntu/github/augur/augur/tasks/init/celery_app.py", line 105, in on_failure
self.augur_handle_task_failure(exc, task_id, repo_git, "core_task_failure")
File "/home/ubuntu/github/augur/augur/tasks/init/celery_app.py", line 88, in augur_handle_task_failure
repo = session.query(Repo).filter(Repo.repo_git == repo_git).one()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/query.py", line 2798, in one
return self._iter().one() # type: ignore
^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/query.py", line 2847, in _iter
result: Union[ScalarResult[_T], Result[_T]] = self.session.execute(
^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/session.py", line 2306, in execute
return self._execute_internal(
^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/session.py", line 2188, in _execute_internal
result: Result[Any] = compile_state_cls.orm_execute_statement(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/context.py", line 293, in orm_execute_statement
result = conn.execute(
^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1416, in execute
return meth(
^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/sql/elements.py", line 516, in _execute_on_connection
return connection._execute_clauseelement(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1639, in _execute_clauseelement
ret = self._execute_context(
^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1848, in _execute_context
return self._exec_single_context(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1988, in _exec_single_context
self._handle_dbapi_exception(
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 2343, in _handle_dbapi_exception
raise sqlalchemy_exception.with_traceback(exc_info[2]) from e
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1969, in _exec_single_context
self.dialect.do_execute(
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/default.py", line 922, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.ProgrammingError: (psycopg2.errors.UndefinedFunction) operator does not exist: character varying = integer[]
LINE 3: WHERE augur_data.repo.repo_git = ARRAY[59,58,57,56,55,54,53,...
^
HINT: No operator matches the given name and argument types. You might need to add explicit type casts.
[SQL: SELECT augur_data.repo.repo_id AS augur_data_repo_repo_id, augur_data.repo.repo_group_id AS augur_data_repo_repo_group_id, augur_data.repo.repo_git AS augur_data_repo_repo_git, augur_data.repo.repo_path AS augur_data_repo_repo_path, augur_data.repo.repo_name AS augur_data_repo_repo_name, augur_data.repo.repo_added AS augur_data_repo_repo_added, augur_data.repo.repo_type AS augur_data_repo_repo_type, augur_data.repo.url AS augur_data_repo_url, augur_data.repo.owner_id AS augur_data_repo_owner_id, augur_data.repo.description AS augur_data_repo_description, augur_data.repo.primary_language AS augur_data_repo_primary_language, augur_data.repo.created_at AS augur_data_repo_created_at, augur_data.repo.forked_from AS augur_data_repo_forked_from, augur_data.repo.updated_at AS augur_data_repo_updated_at, augur_data.repo.repo_archived_date_collected AS augur_data_repo_repo_archived_date_collected, augur_data.repo.repo_archived AS augur_data_repo_repo_archived, augur_data.repo.tool_source AS augur_data_repo_tool_source, augur_data.repo.tool_version AS augur_data_repo_tool_version, augur_data.repo.data_source AS augur_data_repo_data_source, augur_data.repo.data_collection_date AS augur_data_repo_data_collection_date
FROM augur_data.repo
WHERE augur_data.repo.repo_git = %(repo_git_1)s]
[parameters: {'repo_git_1': [59, 58, 57, 56, 55, 54, 53, 52, 51, 50, 49, 48, 47, 46, 45, 44, 43, 42, 41, 40, 39, 38, 37, 36, 35, 34, 33, 32, 31, 30, 29, 28, 27, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1]}]
(Background on this error at: https://sqlalche.me/e/20/f405) |
|
Here is a current stack trace: Traceback (most recent call last):
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 451, in trace_task
R = retval = fun(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 734, in __protected_call__
return self.run(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/augur/augur/tasks/gitlab/issues_task.py", line 218, in collect_gitlab_issue_comments
comments = retrieve_all_gitlab_issue_comments(key_auth, logger, issue_ids, repo_git)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/augur/augur/tasks/gitlab/issues_task.py", line 254, in retrieve_all_gitlab_issue_comments
for page_data, _ in comments.iter_pages(url):
File "/home/ubuntu/github/augur/augur/tasks/gitlab/gitlab_api_handler.py", line 126, in iter_pages
data_list, response, result = self.retrieve_data(url)
^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/augur/augur/tasks/gitlab/gitlab_api_handler.py", line 218, in retrieve_data
self.logger.warning(f"Unhandled gitlab response. Status code: {response.status_code}. Body: {response.json()}")
^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/httpx/_models.py", line 743, in json
return jsonlib.loads(self.text, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/json/__init__.py", line 346, in loads
return _default_decoder.decode(s)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/json/decoder.py", line 337, in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/json/decoder.py", line 355, in raw_decode
raise JSONDecodeError("Expecting value", s, err.value) from None
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1969, in _exec_single_context
self.dialect.do_execute(
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/default.py", line 922, in do_execute
cursor.execute(statement, parameters)
psycopg2.errors.UndefinedFunction: operator does not exist: character varying = integer[]
LINE 3: WHERE augur_data.repo.repo_git = ARRAY[494008,494004,494003,...
^
HINT: No operator matches the given name and argument types. You might need to add explicit type casts.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 468, in trace_task
I, R, state, retval = on_error(task_request, exc, uuid)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 379, in on_error
R = I.handle_error_state(
^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 178, in handle_error_state
return {
^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 231, in handle_failure
task.on_failure(exc, req.id, req.args, req.kwargs, einfo)
File "/home/ubuntu/github/augur/augur/tasks/init/celery_app.py", line 105, in on_failure
self.augur_handle_task_failure(exc, task_id, repo_git, "core_task_failure")
File "/home/ubuntu/github/augur/augur/tasks/init/celery_app.py", line 88, in augur_handle_task_failure
repo = session.query(Repo).filter(Repo.repo_git == repo_git).one()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/query.py", line 2798, in one
return self._iter().one() # type: ignore
^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/query.py", line 2847, in _iter
result: Union[ScalarResult[_T], Result[_T]] = self.session.execute(
^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/session.py", line 2306, in execute
return self._execute_internal(
^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/session.py", line 2188, in _execute_internal
result: Result[Any] = compile_state_cls.orm_execute_statement(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/context.py", line 293, in orm_execute_statement
result = conn.execute(
^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1416, in execute
return meth(
^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/sql/elements.py", line 516, in _execute_on_connection
return connection._execute_clauseelement(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1639, in _execute_clauseelement
ret = self._execute_context(
^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1848, in _execute_context
return self._exec_single_context(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1988, in _exec_single_context
self._handle_dbapi_exception(
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 2343, in _handle_dbapi_exception
raise sqlalchemy_exception.with_traceback(exc_info[2]) from e
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1969, in _exec_single_context
self.dialect.do_execute(
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/default.py", line 922, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.ProgrammingError: (psycopg2.errors.UndefinedFunction) operator does not exist: character varying = integer[]
LINE 3: WHERE augur_data.repo.repo_git = ARRAY[494008,494004,494003,...
^
HINT: No operator matches the given name and argument types. You might need to add explicit type casts.
[SQL: SELECT augur_data.repo.repo_id AS augur_data_repo_repo_id, augur_data.repo.repo_group_id AS augur_data_repo_repo_group_id, augur_data.repo.repo_git AS augur_data_repo_repo_git, augur_data.repo.repo_path AS augur_data_repo_repo_path, augur_data.repo.repo_name AS augur_data_repo_repo_name, augur_data.repo.repo_added AS augur_data_repo_repo_added, augur_data.repo.repo_type AS augur_data_repo_repo_type, augur_data.repo.url AS augur_data_repo_url, augur_data.repo.owner_id AS augur_data_repo_owner_id, augur_data.repo.description AS augur_data_repo_description, augur_data.repo.primary_language AS augur_data_repo_primary_language, augur_data.repo.created_at AS augur_data_repo_created_at, augur_data.repo.forked_from AS augur_data_repo_forked_from, augur_data.repo.updated_at AS augur_data_repo_updated_at, augur_data.repo.repo_archived_date_collected AS augur_data_repo_repo_archived_date_collected, augur_data.repo.repo_archived AS augur_data_repo_repo_archived, augur_data.repo.tool_source AS augur_data_repo_tool_source, augur_data.repo.tool_version AS augur_data_repo_tool_version, augur_data.repo.data_source AS augur_data_repo_data_source, augur_data.repo.data_collection_date AS augur_data_repo_data_collection_date
FROM augur_data.repo
WHERE augur_data.repo.repo_git = %(repo_git_1)s]
[parameters: {'repo_git_1': [494008, 494004, 494003, 494002, 494001, 494000, 493999, 493998, 493997, 493996, 493995, 493994, 493993, 493992, 493991, 493990, 493988, 493987, 49398 ... (1657769 characters truncated) ... 76, 13874, 14068, 13922, 13880, 13868, 13867, 13925, 13870, 13878, 13881, 13879, 13869, 13873, 13871, 13865, 13864, 13863, 13872, 13866, 13862, 13861]}]
(Background on this error at: https://sqlalche.me/e/20/f405)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1969, in _exec_single_context
self.dialect.do_execute(
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/default.py", line 922, in do_execute
cursor.execute(statement, parameters)
psycopg2.errors.UndefinedFunction: operator does not exist: character varying = integer[]
LINE 3: WHERE augur_data.repo.repo_git = ARRAY[494008,494004,494003,...
^
HINT: No operator matches the given name and argument types. You might need to add explicit type casts.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/billiard/pool.py", line 362, in workloop
result = (True, prepare_result(fun(*args, **kwargs)))
^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 649, in fast_trace_task
R, I, T, Rstr = tasks[task].__trace__(
^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 572, in trace_task
I, _, _, _ = on_error(task_request, exc, uuid)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 379, in on_error
R = I.handle_error_state(
^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 178, in handle_error_state
return {
^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 231, in handle_failure
task.on_failure(exc, req.id, req.args, req.kwargs, einfo)
File "/home/ubuntu/github/augur/augur/tasks/init/celery_app.py", line 105, in on_failure
self.augur_handle_task_failure(exc, task_id, repo_git, "core_task_failure")
File "/home/ubuntu/github/augur/augur/tasks/init/celery_app.py", line 88, in augur_handle_task_failure
repo = session.query(Repo).filter(Repo.repo_git == repo_git).one()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/query.py", line 2798, in one
return self._iter().one() # type: ignore
^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/query.py", line 2847, in _iter
result: Union[ScalarResult[_T], Result[_T]] = self.session.execute(
^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/session.py", line 2306, in execute
return self._execute_internal(
^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/session.py", line 2188, in _execute_internal
result: Result[Any] = compile_state_cls.orm_execute_statement(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/orm/context.py", line 293, in orm_execute_statement
result = conn.execute(
^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1416, in execute
return meth(
^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/sql/elements.py", line 516, in _execute_on_connection
return connection._execute_clauseelement(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1639, in _execute_clauseelement
ret = self._execute_context(
^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1848, in _execute_context
return self._exec_single_context(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1988, in _exec_single_context
self._handle_dbapi_exception(
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 2343, in _handle_dbapi_exception
raise sqlalchemy_exception.with_traceback(exc_info[2]) from e
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1969, in _exec_single_context
self.dialect.do_execute(
File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/sqlalchemy/engine/default.py", line 922, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.ProgrammingError: (psycopg2.errors.UndefinedFunction) operator does not exist: character varying = integer[]
LINE 3: WHERE augur_data.repo.repo_git = ARRAY[494008,494004,494003,...
^
HINT: No operator matches the given name and argument types. You might need to add explicit type casts.
[SQL: SELECT augur_data.repo.repo_id AS augur_data_repo_repo_id, augur_data.repo.repo_group_id AS augur_data_repo_repo_group_id, augur_data.repo.repo_git AS augur_data_repo_repo_git, augur_data.repo.repo_path AS augur_data_repo_repo_path, augur_data.repo.repo_name AS augur_data_repo_repo_name, augur_data.repo.repo_added AS augur_data_repo_repo_added, augur_data.repo.repo_type AS augur_data_repo_repo_type, augur_data.repo.url AS augur_data_repo_url, augur_data.repo.owner_id AS augur_data_repo_owner_id, augur_data.repo.description AS augur_data_repo_description, augur_data.repo.primary_language AS augur_data_repo_primary_language, augur_data.repo.created_at AS augur_data_repo_created_at, augur_data.repo.forked_from AS augur_data_repo_forked_from, augur_data.repo.updated_at AS augur_data_repo_updated_at, augur_data.repo.repo_archived_date_collected AS augur_data_repo_repo_archived_date_collected, augur_data.repo.repo_archived AS augur_data_repo_repo_archived, augur_data.repo.tool_source AS augur_data_repo_tool_source, augur_data.repo.tool_version AS augur_data_repo_tool_version, augur_data.repo.data_source AS augur_data_repo_data_source, augur_data.repo.data_collection_date AS augur_data_repo_data_collection_date
FROM augur_data.repo
WHERE augur_data.repo.repo_git = %(repo_git_1)s]
[parameters: {'repo_git_1': [494008, 494004, 494003, 494002, 494001, 494000, 493999, 493998, 493997, 493996, 493995, 493994, 493993, 493992, 493991, 493990, 493988, 493987, 49398 ... (1657769 characters truncated) ... 76, 13874, 14068, 13922, 13880, 13868, 13867, 13925, 13870, 13878, 13881, 13879, 13869, 13873, 13871, 13865, 13864, 13863, 13872, 13866, 13862, 13861]}]
(Background on this error at: https://sqlalche.me/e/20/f405) |
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