From f7a35ea9352dbddd770a52d3a960bc1e93608225 Mon Sep 17 00:00:00 2001 From: LaraFuhrmann <55209716+LaraFuhrmann@users.noreply.github.com> Date: Mon, 22 Jul 2024 13:01:24 +0200 Subject: [PATCH] update dir + tests --- tests/test_long_deletions.py | 4 ++-- viloca/shotgun.py | 1 + 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/tests/test_long_deletions.py b/tests/test_long_deletions.py index 8dca47d..2793b99 100644 --- a/tests/test_long_deletions.py +++ b/tests/test_long_deletions.py @@ -16,8 +16,8 @@ def test_long_deletions(): # Input data bamfile = "test_aln.cram" - snvsfile = "snv/SNV.tsv" - outfile = "snv/SNVs_0.010000.tsv" + snvsfile = "debug/snv/SNV.tsv" + outfile = "debug/snv/SNVs_0.010000.tsv" helper_long_deletions.main(bamfile=bamfile, snvsfile=snvsfile, outfile=outfile) diff --git a/viloca/shotgun.py b/viloca/shotgun.py index 0c78343..bf3b267 100644 --- a/viloca/shotgun.py +++ b/viloca/shotgun.py @@ -688,6 +688,7 @@ def main(args): shutil.move("raw_reads", "debug") shutil.move("sampling", "debug") shutil.move("freq", "debug") + shutil.move("corrected", "debug") shutil.move("reads.fas", "debug") shutil.move("proposed.dat", "debug") shutil.copy("snv/SNVs_0.010000_final.vcf", "SNVs_0.010000_final.vcf")