From 6b291408c48e87adc85b23fa49282e58e2fef217 Mon Sep 17 00:00:00 2001
From: LaraFuhrmann <55209716+LaraFuhrmann@users.noreply.github.com>
Date: Thu, 25 Apr 2024 13:52:45 +0200
Subject: [PATCH] fix last window going over the end of reference seq

---
 viloca/tiling.py | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/viloca/tiling.py b/viloca/tiling.py
index 2665f2b..5a2ab77 100644
--- a/viloca/tiling.py
+++ b/viloca/tiling.py
@@ -103,8 +103,9 @@ def get_window_tilings(self) -> List[Tuple[int, int]]:
                 self.end - 1,
                 self.incr
             ))
-            #while window_positions[-1] + self.window_length >= self.end:
-            #    del window_positions[-1] # FIXME uncommented to create one single window
+            while window_positions[-1] + self.window_length >= self.end:
+                del window_positions[-1] # FIXME uncommented to create one single window
+                window_positions.append(self.end - 1 - self.window_length)
 
         else:
             window_positions = list(range(