Merge branch 'master' of https://github.com/cbcrg/tcoffee.org

cbcrg · Dec 1, 2023 · 98f796b · 98f796b
2 parents 077aa20 + 9639b83
commit 98f796b
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Showing 52 changed files with 8 additions and 2 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -20,4 +20,7 @@ jobs:
         aws-region: eu-central-1
 
     - name: Deploy static site to S3 bucket
-      run: aws s3 sync ./public_html/ s3://tcoffee.org --delete --exclude "Packages/Archives/*"
+      run: |
+        aws s3 sync ./public_html/ s3://tcoffee.org --delete --exclude "Packages/Archives/*"
+        # synchronize s3 bucket containing the file listing
+        aws s3 sync ./public_html/Packages/Binaries/plugins/ s3://tcoffee-packages/Binaries/plugins/ --delete
diff --git a/public_html/Courses/Exercises/index.html b/public_html/Courses/Exercises/index.html
@@ -33,7 +33,10 @@ <h2><font color="#0000EE">Cedric Notredame</font></h2>
 	    <tr>
 	      <th BGCOLOR="#FFDDAA"><h2>Available Ressources</h2></th>
 	    </tr>
-
+	    <tr align=center>
+	      <td><font size=+1><A HREF="./2019_uab_ma/index.html">Sequence Comparison, UAB, November 2022</a></td>
+
+	    </tr>
             </tr>
             <tr align=center>
 	      <td><font size=+1><A HREF="./2021_uab_ma/index.html">Sequence Comparison, UAB, November 2021</a></td>

diff --git a/public_html/Packages/Binaries/plugins/linux/RNAplfold.tar.gz b/public_html/Packages/Binaries/plugins/linux/RNAplfold.tar.gz
diff --git a/public_html/Packages/Binaries/plugins/linux/TMalign b/public_html/Packages/Binaries/plugins/linux/TMalign
diff --git a/public_html/Packages/Binaries/plugins/linux/amap b/public_html/Packages/Binaries/plugins/linux/amap
diff --git a/public_html/Packages/Binaries/plugins/linux/clustalo b/public_html/Packages/Binaries/plugins/linux/clustalo
diff --git a/public_html/Packages/Binaries/plugins/linux/clustalw b/public_html/Packages/Binaries/plugins/linux/clustalw
diff --git a/public_html/Packages/Binaries/plugins/linux/clustalw2 b/public_html/Packages/Binaries/plugins/linux/clustalw2
diff --git a/public_html/Packages/Binaries/plugins/linux/dialign-t b/public_html/Packages/Binaries/plugins/linux/dialign-t
diff --git a/public_html/Packages/Binaries/plugins/linux/dialign-tx b/public_html/Packages/Binaries/plugins/linux/dialign-tx
diff --git a/public_html/Packages/Binaries/plugins/linux/hmmtop b/public_html/Packages/Binaries/plugins/linux/hmmtop
diff --git a/public_html/Packages/Binaries/plugins/linux/kalign b/public_html/Packages/Binaries/plugins/linux/kalign
diff --git a/public_html/Packages/Binaries/plugins/linux/mafft.tar.gz b/public_html/Packages/Binaries/plugins/linux/mafft.tar.gz
diff --git a/public_html/Packages/Binaries/plugins/linux/msaprobs b/public_html/Packages/Binaries/plugins/linux/msaprobs
diff --git a/public_html/Packages/Binaries/plugins/linux/muscle b/public_html/Packages/Binaries/plugins/linux/muscle
diff --git a/public_html/Packages/Binaries/plugins/linux/mustang b/public_html/Packages/Binaries/plugins/linux/mustang
diff --git a/public_html/Packages/Binaries/plugins/linux/pcma b/public_html/Packages/Binaries/plugins/linux/pcma
diff --git a/public_html/Packages/Binaries/plugins/linux/poa b/public_html/Packages/Binaries/plugins/linux/poa
diff --git a/public_html/Packages/Binaries/plugins/linux/prank b/public_html/Packages/Binaries/plugins/linux/prank
diff --git a/public_html/Packages/Binaries/plugins/linux/probcons b/public_html/Packages/Binaries/plugins/linux/probcons
diff --git a/public_html/Packages/Binaries/plugins/linux/probcons.old b/public_html/Packages/Binaries/plugins/linux/probcons.old
diff --git a/public_html/Packages/Binaries/plugins/linux/probconsRNA b/public_html/Packages/Binaries/plugins/linux/probconsRNA
diff --git a/public_html/Packages/Binaries/plugins/linux/proda b/public_html/Packages/Binaries/plugins/linux/proda
diff --git a/public_html/Packages/Binaries/plugins/linux/retree.tar.gz b/public_html/Packages/Binaries/plugins/linux/retree.tar.gz
diff --git a/public_html/Packages/Binaries/plugins/linux/sap b/public_html/Packages/Binaries/plugins/linux/sap
diff --git a/public_html/Packages/Binaries/plugins/linux/strike b/public_html/Packages/Binaries/plugins/linux/strike
diff --git a/public_html/Packages/Binaries/plugins/linux/x3dna.tar.gz b/public_html/Packages/Binaries/plugins/linux/x3dna.tar.gz
diff --git a/public_html/Packages/Binaries/plugins/macosx/RNAplfold.tar.gz b/public_html/Packages/Binaries/plugins/macosx/RNAplfold.tar.gz
diff --git a/public_html/Packages/Binaries/plugins/macosx/TMalign b/public_html/Packages/Binaries/plugins/macosx/TMalign
diff --git a/public_html/Packages/Binaries/plugins/macosx/amap b/public_html/Packages/Binaries/plugins/macosx/amap
diff --git a/public_html/Packages/Binaries/plugins/macosx/clustalo b/public_html/Packages/Binaries/plugins/macosx/clustalo
diff --git a/public_html/Packages/Binaries/plugins/macosx/clustalw b/public_html/Packages/Binaries/plugins/macosx/clustalw
diff --git a/public_html/Packages/Binaries/plugins/macosx/clustalw2 b/public_html/Packages/Binaries/plugins/macosx/clustalw2
diff --git a/public_html/Packages/Binaries/plugins/macosx/dialign-t b/public_html/Packages/Binaries/plugins/macosx/dialign-t
diff --git a/public_html/Packages/Binaries/plugins/macosx/dialign-t.tar.gz b/public_html/Packages/Binaries/plugins/macosx/dialign-t.tar.gz
diff --git a/public_html/Packages/Binaries/plugins/macosx/dialign-tx b/public_html/Packages/Binaries/plugins/macosx/dialign-tx
diff --git a/public_html/Packages/Binaries/plugins/macosx/dialign-tx.tar.gz b/public_html/Packages/Binaries/plugins/macosx/dialign-tx.tar.gz
diff --git a/public_html/Packages/Binaries/plugins/macosx/hmmtop b/public_html/Packages/Binaries/plugins/macosx/hmmtop
diff --git a/public_html/Packages/Binaries/plugins/macosx/kalign b/public_html/Packages/Binaries/plugins/macosx/kalign
diff --git a/public_html/Packages/Binaries/plugins/macosx/mafft.tar.gz b/public_html/Packages/Binaries/plugins/macosx/mafft.tar.gz
diff --git a/public_html/Packages/Binaries/plugins/macosx/msaprobs b/public_html/Packages/Binaries/plugins/macosx/msaprobs
diff --git a/public_html/Packages/Binaries/plugins/macosx/muscle b/public_html/Packages/Binaries/plugins/macosx/muscle
diff --git a/public_html/Packages/Binaries/plugins/macosx/mustang b/public_html/Packages/Binaries/plugins/macosx/mustang
diff --git a/public_html/Packages/Binaries/plugins/macosx/pcma b/public_html/Packages/Binaries/plugins/macosx/pcma
diff --git a/public_html/Packages/Binaries/plugins/macosx/poa b/public_html/Packages/Binaries/plugins/macosx/poa
diff --git a/public_html/Packages/Binaries/plugins/macosx/prank b/public_html/Packages/Binaries/plugins/macosx/prank
diff --git a/public_html/Packages/Binaries/plugins/macosx/probcons b/public_html/Packages/Binaries/plugins/macosx/probcons
diff --git a/public_html/Packages/Binaries/plugins/macosx/probconsRNA b/public_html/Packages/Binaries/plugins/macosx/probconsRNA
diff --git a/public_html/Packages/Binaries/plugins/macosx/proda b/public_html/Packages/Binaries/plugins/macosx/proda
diff --git a/public_html/Packages/Binaries/plugins/macosx/retree.tar.gz b/public_html/Packages/Binaries/plugins/macosx/retree.tar.gz
diff --git a/public_html/Packages/Binaries/plugins/macosx/sap b/public_html/Packages/Binaries/plugins/macosx/sap
diff --git a/public_html/Packages/Binaries/plugins/macosx/strike b/public_html/Packages/Binaries/plugins/macosx/strike