Name		Name	Last commit message	Last commit date
parent directory ..
config		config
docker_1		docker_1
docker_10		docker_10
docker_2		docker_2
docker_3		docker_3
docker_4		docker_4
docker_5		docker_5
docker_6		docker_6
docker_7		docker_7
docker_8		docker_8
docker_9		docker_9
native_1		native_1
native_10		native_10
native_2		native_2
native_3		native_3
native_4		native_4
native_5		native_5
native_6		native_6
native_7		native_7
native_8		native_8
native_9		native_9
Figures.R		Figures.R
Makefile		Makefile
README.md		README.md
delta.groovy		delta.groovy
fig_correlation.png		fig_correlation.png
file-formats.md		file-formats.md
plot.csv		plot.csv
plot.sh		plot.sh
plot_docker.txt		plot_docker.txt
plot_native.txt		plot_native.txt
rnatoy-local.zip		rnatoy-local.zip
stage.sh		stage.sh
stats_docker.txt		stats_docker.txt
stats_native.txt		stats_native.txt
table.R		table.R
table.txt		table.txt
time.sh		time.sh
time_docker.txt		time_docker.txt
time_native.txt		time_native.txt
trace_docker.txt		trace_docker.txt
trace_native.txt		trace_native.txt

README.md

RNAToy stats

This folder contains the log files for the RNAToy pipeline executions.

To generate the figures use the make command. It creates the following assets:

time_native.txt: Summary table of times for native executions
time_docker.txt: Summary table of times for docker executions
fig_wall_time.png: Box plot of pipeline wall-clock execution time
fig_run_time.png: Box plot of pipeline aggregate tasks run-time
fig_correlation.png: Correlation between docker and native tasks time execution