publish.yml

name: deploy-book

# Only run this when the main branch changes
on:
  push:
    branches:
    - main
  pull_request:

# This job installs dependencies, builds the book, and pushes it to `gh-pages`
jobs:
  deploy-book:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v2

    # Install dependencies
    - name: Set up Python 3.8
      uses: actions/setup-python@v2
      with:
        python-version: 3.8

    - uses: conda-incubator/setup-miniconda@v2
      with:
        activate-environment: qiime2
        environment-file: environment.yml
        auto-activate-base: false

    - name: Install dependencies
      shell: bash -e -l {0}
      run: |
        pip install -r requirements.txt

    # Build the book
    - name: Build the book
      shell: bash -e -l {0}
      run: |
        make html

    # Push the book's HTML to github-pages
    - name: GitHub Pages action
      uses: peaceiris/actions-gh-pages@v3.6.1
      if: ${{ github.ref == 'refs/heads/main' }}
      with:
        github_token: ${{ secrets.GITHUB_TOKEN }}
        publish_dir: ./book/_build/html