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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(as.grob,aplot)
export(build_mStat_tax_table)
export(generate_alpha_boxplot_long)
export(generate_alpha_boxplot_single)
export(generate_alpha_change_boxplot_pair)
export(generate_alpha_change_per_time_test_long)
export(generate_alpha_change_test_pair)
export(generate_alpha_per_time_dotplot_long)
export(generate_alpha_per_time_test_long)
export(generate_alpha_spaghettiplot_long)
export(generate_alpha_test_pair)
export(generate_alpha_test_single)
export(generate_alpha_trend_test_long)
export(generate_alpha_volatility_test_long)
export(generate_beta_change_boxplot_long)
export(generate_beta_change_boxplot_pair)
export(generate_beta_change_per_time_test_long)
export(generate_beta_change_spaghettiplot_long)
export(generate_beta_change_test_pair)
export(generate_beta_ordination_long)
export(generate_beta_ordination_pair)
export(generate_beta_ordination_single)
export(generate_beta_pc_boxplot_long)
export(generate_beta_pc_change_boxplot_pair)
export(generate_beta_pc_spaghettiplot_long)
export(generate_beta_pc_trend_test_long)
export(generate_beta_pc_volatility_test_long)
export(generate_beta_per_time_dotplot_long)
export(generate_beta_test_single)
export(generate_beta_trend_test_long)
export(generate_beta_volatility_test_long)
export(generate_taxa_areaplot_long)
export(generate_taxa_association_test_long)
export(generate_taxa_barplot_long)
export(generate_taxa_barplot_pair)
export(generate_taxa_barplot_single)
export(generate_taxa_boxplot_long)
export(generate_taxa_boxplot_single)
export(generate_taxa_change_boxplot_pair)
export(generate_taxa_change_dotplot_pair)
export(generate_taxa_change_heatmap_long)
export(generate_taxa_change_heatmap_pair)
export(generate_taxa_change_per_time_test_long)
export(generate_taxa_change_scatterplot_pair)
export(generate_taxa_change_test_pair)
export(generate_taxa_cladogram_single)
export(generate_taxa_dotplot_pair)
export(generate_taxa_dotplot_single)
export(generate_taxa_heatmap_long)
export(generate_taxa_heatmap_pair)
export(generate_taxa_heatmap_single)
export(generate_taxa_indiv_boxplot_long)
export(generate_taxa_indiv_boxplot_single)
export(generate_taxa_indiv_change_boxplot_pair)
export(generate_taxa_indiv_change_scatterplot_pair)
export(generate_taxa_indiv_spaghettiplot_long)
export(generate_taxa_per_time_dotplot_long)
export(generate_taxa_per_time_test_long)
export(generate_taxa_spaghettiplot_long)
export(generate_taxa_test_pair)
export(generate_taxa_test_single)
export(generate_taxa_trend_test_long)
export(generate_taxa_trend_volcano_long)
export(generate_taxa_volatility_test_long)
export(generate_taxa_volatility_volcano_long)
export(generate_taxa_volcano_single)
export(is_categorical)
export(is_continuous_numeric)
export(is_rarefied)
export(linda)
export(linda.plot)
export(mStat_aggregate_by_taxonomy)
export(mStat_aggregate_by_taxonomy2)
export(mStat_aggregate_data)
export(mStat_calculate_PC)
export(mStat_calculate_adjusted_alpha_diversity)
export(mStat_calculate_adjusted_distance)
export(mStat_calculate_alpha_diversity)
export(mStat_calculate_beta_diversity)
export(mStat_combine_data)
export(mStat_convert_DESeqDataSet_to_data_obj)
export(mStat_convert_DGEList_to_data_obj)
export(mStat_convert_MRExperiment_to_data_obj)
export(mStat_convert_MultiAssayExperiment_to_data_obj)
export(mStat_convert_SummarizedExperiment_to_data_obj)
export(mStat_convert_phyloseq_to_data_obj)
export(mStat_filter)
export(mStat_generate_report_long)
export(mStat_generate_report_pair)
export(mStat_generate_report_single)
export(mStat_get_palette)
export(mStat_get_theme)
export(mStat_identify_time_varying_vars)
export(mStat_import_biom_as_data_obj)
export(mStat_import_dada2_as_data_obj)
export(mStat_import_mothur_as_data_obj)
export(mStat_import_qiime2_as_data_obj)
export(mStat_normalize_data)
export(mStat_process_time_variable)
export(mStat_rarefy_data)
export(mStat_remove_feature)
export(mStat_subset_PC)
export(mStat_subset_alpha)
export(mStat_subset_data)
export(mStat_subset_dist)
export(mStat_summarize_data_obj)
export(mStat_update_meta_data)
export(mStat_update_sample_name)
export(mStat_validate_data)
export(plot_alpha_diversity)
export(plot_beta_diversity)
export(plot_feature_diversity)
import(foreach)
import(ggplot2)
import(parallel)
import(rlang)
import(tibble)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,pull)
importFrom(dplyr,select)
importFrom(ggplot2,aes_)
importFrom(ggplot2,annotation_custom)
importFrom(ggplot2,geom_blank)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplotGrob)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme_void)
importFrom(grDevices,dev.list)
importFrom(grDevices,dev.new)
importFrom(grDevices,dev.off)
importFrom(graphics,par)
importFrom(grid,grid.draw)
importFrom(grid,rasterGrob)
importFrom(grid,viewport)
importFrom(lmerTest,lmer)
importFrom(matrixStats,rowSds)
importFrom(modeest,mlv)
importFrom(tibble,column_to_rownames)