Data Visualization with R Workshop: Data Science Platform

Welcome to the Data Visualization with R Workshop! Below are two setup options:

• Run the workshop in the cloud (no need to install anything).
• Run the workshop locally on your machine.

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Option 1: Run in the Cloud

1. Register at this link to access the cloud environment:
   Posit Cloud Workspace

2. Once logged in, accept to join the workspace. After that, you'll see the workspace called Workshop_DataViz_R_DTU_2024; click to enter and go to the following Introduction

3. In the bottom right menu, open the 01_workshop_codes.html file from the provided workspace in your favorite browser (preferable Google Chrome). 01_Code/workshop_R.html

4. Read in the HTML file to understand the workshop.

5. Open the 01_workshop_codes.Rmd file from the provided workspace and wait for instructions.

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Option 2: Run Locally

1. Clone the repository:

   git clone https://github.com/biosustain/dsp_workshop_datavizR

2. Navigate to the repository:

   cd dsp_workshop_datavizR

3. Open the workshop instructions:
   Open this file in your browser:
   01_Code/workshop_R.html

4. Read in the HTML file to understand the workshop.

5. Open the RStudio and load the 01_workshop_codes.Rmd file

6. Inside the Rmd file, Run the chunks r install packages file to install all required R packages (lines 72 to 89)

7. Load the libraries r libraries chuncks (line 117 to 139) and wait for instructions.

Option 2: You can also copy and paste the code in your Rstudio

Steps 6 and 7:

# List of packages to install
packages <- c("ggpubr", "grid", "tidyr", "reshape2", "reshape", "ggrepel", "ggh4x", "pheatmap", "RColorBrewer", "patchwork","DT", "kableExtra", "plotly", "bookdown", "heatmaply", "gganimate", "gifski")

# Install missing packages
new_packages <- packages[!(packages %in% installed.packages()[,"Package"])]
if(length(new_packages)) install.packages(new_packages)

# Load the libraries
lapply(packages, library, character.only = TRUE)

# BiocManager
if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ComplexHeatmap")

library(ggplot2)
library(ggpubr)
library(grid)
library(tidyr)
library(reshape2)
library(ggrepel)
library(ggh4x)
library(pheatmap)
library(RColorBrewer)
library(patchwork)
library(DT)
library(dplyr)
library(kableExtra)
library(ComplexHeatmap)
library(plotly)
library(bookdown)
library(heatmaply)
library(circlize) 
#Extra
library(gganimate)
library(gifski)