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Taxonomy changes? #8

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ykcchong opened this issue Feb 23, 2022 · 1 comment · May be fixed by #9
Open

Taxonomy changes? #8

ykcchong opened this issue Feb 23, 2022 · 1 comment · May be fixed by #9

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@ykcchong
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#   Failed test at t/Taxonomy.t line 48.

#   Failed test 'Correct: No hit'
#   at t/Taxonomy.t line 181.
#          got: '2890685'
#     expected: 'No hit'
# Looks like you failed 2 tests of 69.

The taxonomy of this organism seems to have changed.

https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2890685

The above references to:

https://www.ncbi.nlm.nih.gov/nuccore/2129084358

Thanks!
@pgcudahy pgcudahy linked a pull request Mar 17, 2022 that will close this issue
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@pcrxn pcrxn mentioned this issue Apr 6, 2022
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@inDane
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inDane commented May 6, 2022

for everyone ending up with this, use:
cpan> force install Bio::DB::NCBIHelper

@stevenhwu stevenhwu mentioned this issue Sep 12, 2022
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fix broken tests pgcudahy/Bio-DB-NCBIHelper
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@inDane @ykcchong