.gitignore

# editor files
*~
*#

# test directory
tests/pysam/
tests/tmp*
tests/*.bam
tests/*.bai
tests/*.gz
tests/*.c
tests/*.pyxbldc
tests/*.sam
tests/*.fai
tests/pysam_data
tests/cbcf_data

samtools/config.h
htslib/config.status
htslib/config.h
htslib/config.log
htslib/config.mk
pysam/config.py

# cython files
pysam/TabProxies.c
pysam/csamtools.c
pysam/ctabix.c
pysam/cvcf.c
pysam/chtslib.c  
pysam/cutils.c
pysam/calignedsegment.c
pysam/calignmentfile.c
pysam/cbcf.c
pysam/cfaidx.c
pysam/chtslib.c
pysam/csamfile.c
pysam/ctabixproxies.c

###### Generic python ignores below ######

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]

# C extensions
*.so

# Distribution / packaging
.Python
env/
bin/
build/
develop-eggs/
dist/
eggs/
lib/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
.tox/
.coverage
.cache
nosetests.xml
coverage.xml

# Translations
*.mo

# Mr Developer
.mr.developer.cfg
.project
.pydevproject

# Rope
.ropeproject

# Django stuff:
*.log
*.pot

# Sphinx documentation
docs/_build/