Equivalent of Basic Linux commands for windows

[IAlibay]

We probably need to provide an equivalent set of Basic Linux commands for Windows shell.

Also, we probably should be telling users to use the anaconda prompt, specifically (cmd won't pick up anaconda in most cases).

I do wonder, rather than providing instructions where you have both set of commands given at the same time, would it make sense to have two separate html files, one for linux/mac/wsl and one for windows? (I still need to test out the windows build, I'll have a better idea of how much of a difference there is when I do).

[IAlibay]

One of the advantages here is that if issue #100 works out, we could have the Linux/MacOS/WSL build be completely done by a yaml file. That way the instructions can be simplified to conda create... and then we port the instructions inside of a README file?

[IAlibay]

Given the feedback from #96, maybe "Linux commands" should be made into a separate html that we can link to in both the MD and Docking tutorials? That way we don't end up duplicating things?

[IAlibay]

In setup instructions now.