attempt #? #7
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| name: build_docker | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| #pull_request: | |
| # branches: | |
| # - main | |
| # - dev | |
| workflow_call: | |
| secrets: | |
| DOCKERENV: | |
| required: true | |
| description: 'Access to AWS RDS server' | |
| jobs: | |
| build_docker: | |
| env: | |
| JHUB_VER: 1.4.2 | |
| PY_VER: 3.9 | |
| DIST: debian | |
| WORKFLOW_VERSION: 0.1.0 | |
| REPO_OWNER: bernardosabatinilab | |
| REPO_NAME: sabatini-datajoint-pipeline | |
| CONTAINER_USER: anaconda | |
| DJ_HOST: sabatini-dj-prd01.cluster-cjvmzxer50q5.us-east-1.rds.amazonaws.com | |
| DJ_USER: jbw25 | |
| DJ_PASS: ${{ secrets.DOCKERENV }} | |
| DATABASE_PREFIX: sabatini_dj_ | |
| RAW_ROOT_DATA_DIR: /home/${CONTAINER_USER}/inbox | |
| PROCESSED_ROOT_DATA_DIR: /home/${CONTAINER_USER}/outbox | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Set up Docker Compose | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y docker-compose | |
| - name: Build and run Docker Compose | |
| run: | | |
| docker-compose -f ./docker/standard_worker/dist/debian/docker-compose-standard_worker.yaml -p sabatini-datajoint-pipeline_standard build | |
| - name: Clean up Docker Compose | |
| run: | | |
| docker-compose -f ./docker/standard_worker/dist/debian/docker-compose-standard_worker.yaml down | |