Integrate CARCADE into v3

[jessicasyu]

CARCADE branched off ARCADE v2 and we would like to re-integrate it into ARCADE v3.

@allison-li-1016 can you take a stab at updating this description with a summary of the top level tasks needed to do this integration? e.g. which classes need to be moved over, what items are critical vs. nice to have (visualization?), etc.

[allison-li-1016]

Summary

Currently CARCADE exists as a separate repo built upon the 2.4 version of ARCADE. I would like to integrate the CAR-T agents, modules, and helpers into ARCADE 3.0

High Priority Tasks

• Move CAR-T agent, module, helper classes over to 3.0
• Verify published CARCADE simulations can be ran in 3.0 integration #43

Lower Priority Tasks

• Write unit tests for CARCADE #44
• Add visualization for CARCADE #45

CARCADE Classes to Integrate

Agents

• PatchCellCART
• PatchCellCARTCD4
• PatchCellCARTCD8

Modules

• PatchProcessMetabolismCART
• PatchProcessInflammation
• PatchProcessInflammationCD4
• PatchProcessInflammationCD8

Actions

• PatchActionTreat
• PatchActionKill
• PatchActionReset

ARCADE Classes to Change

• PatchCellContainer
• PatchProcessProliferation
• PatchProcessMetabolism
• PatchCell
• PatchEnums

[jessicasyu]

@allison-li-1016 Thanks! Could you move those tasks into separate issues?