test.yml

name: Integration
on: [push, pull_request]
jobs:
  test:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-20.04, ubuntu-22.04, macos-12]
      fail-fast: false
    steps:
      - uses: actions/checkout@v3
      - name: Install Ubuntu dependencies
        if: startsWith(matrix.os, 'ubuntu')
        run: |
          sudo apt update
          sudo apt install -y build-essential cmake qtbase5-dev libblas-dev liblapack-dev 
          sudo apt install -y libopenblas-dev mesa-common-dev libgl1-mesa-dev libglu1-mesa-dev
          sudo apt install -y libvtk7-dev openmpi-bin libopenmpi-dev
          sudo apt install -y lcov
      - name: Install MacOS dependencies
        if: startsWith(matrix.os, 'macos')
        run: | 
          brew install cmake vtk openblas lapack mesa open-mpi qt
          brew install lcov
          sudo ln -s /usr/local/opt/qt5/mkspecs /usr/local/mkspecs
          sudo ln -s /usr/local/opt/qt5/plugins /usr/local/plugins
      - name: Build svFSIplus
        run: |
          mkdir build
          cd build
          cmake -DENABLE_COVERAGE=ON ..
          make -j2
      - name: Install test dependencies
        run: |
          conda create -n svfsiplus python=3.9
          conda run -n svfsiplus pip install pytest pytest-cov pytest-mock numpy meshio pandas
      - name: Run integration tests
        run: |
          git lfs pull
          cd tests
          conda run -n svfsiplus pytest -v --durations=0
      - name: Generate code coverage
        if: startsWith(matrix.os, 'ubuntu-22.04')
        run: |
          cd build/svFSI-build
          make coverage
      - name: Save coverage report
        if: startsWith(matrix.os, 'ubuntu-22.04')
        uses: actions/upload-artifact@v3
        with:
          name: coverage_report
          path: build/svFSI-build/coverage