Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Where can I find ppi and enron dataset? #5

Open
lcgsglance opened this issue Jan 2, 2020 · 4 comments
Open

Where can I find ppi and enron dataset? #5

lcgsglance opened this issue Jan 2, 2020 · 4 comments
Labels
bug Something isn't working

Comments

@lcgsglance
Copy link

Describe the bug
hi-union-ppi.tsv and enron_slice_0.pkl are not found.

And when I use --bmname=[REDDIT-BINARY/Mutagenicity/Tox21_AHR],nothing happened,no ckpt exitsted.Where should I put these three datasets when they were downloaded manually.

Platform

  • OS: [e.g. Windows]
  • Python [e.g. 3.7]
  • Version [e.g. latest]
@lcgsglance lcgsglance added the bug Something isn't working label Jan 2, 2020
@RexYing
Copy link
Owner

RexYing commented Jan 9, 2020

The REDDIT-BINARY/Mutagenicity/Tox21_AHR can be found at https://ls11-www.cs.tu-dortmund.de/staff/morris/graphkerneldatasets

@lcgsglance
Copy link
Author

The REDDIT-BINARY/Mutagenicity/Tox21_AHR can be found at https://ls11-www.cs.tu-dortmund.de/staff/morris/graphkerneldatasets

Thanks for your response.But after downloading these datasets and retraining the models
,I still cannot find ckpt or pth.tar of REDDIT-BINARY/Mutagenicity/Tox21_AHR models.

>python explainer_main.py --bmname=REDDIT-BINARY --gpu


CUDA 0
loading model
ckpt\REDDIT-BINARY_base_h20_o20.pth.tar
Checkpoint does not exist!
Checked path -- ckpt\REDDIT-BINARY_base_h20_o20.pth.tar
Make sure you have provided the correct path!
You may have forgotten to train a model for this dataset.

To train one of the paper's models, run the following
>> python train.py --dataset=DATASET_NAME

Traceback (most recent call last):
  File "explainer_main.py", line 316, in <module>
    main()
  File "explainer_main.py", line 193, in main
    ckpt = io_utils.load_ckpt(prog_args)
  File "C:\Users\Administrator\Desktop\gnn-model-explainer\utils\io_utils.py", line 124, in load_ckpt
    raise Exception("File not found.")
Exception: File not found.

@Lianlii
Copy link

Lianlii commented Dec 3, 2020

Maybe you don’t train the model before explain it

@mina19
Copy link

mina19 commented Oct 25, 2021

I'm having similar problems.
When I try running "python train.py --dataset=ppi_essential" I get an error that the file hi-union-ppi.tsv does not exist. Where can I get this file?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

No branches or pull requests

4 participants