input.mdp

; SYSTEM FLAGS 
; ========================================== 
tesselation = yes         ; yes(default)/no       
system = bilayer          ; monolayer(default)/bilayer 
procedure = 1             ; 1=testing,  2=stats (default), 3=line-tension. 
clustering = 1            ; 1=Pz (Default),  2=m6,  3=Pz & m6 

rcut_h = 2.20		      ; Head beads cutoff raddi
rcut_t = 2.20             ; Tail cutoff raddi

rcut_vll = 0.66		      ; Voronoi cutoff raddi lipid-lipid
rcut_vlp = 0.66		      ; Voronoi cutoff lipid-protein bead
rcut_vpp = 0.66		      ; Voronoi cutoff protein-protein beads

; CURVATURE FLAG0 
; ========================================== 
curvature = 3             ; 0=nothing(default), 1=midplane, 2=monolayer(s), 3=midplane and monolayer
geometry = 1              ; 1=Planar, 2=Polar, 3=spherical
filter-type = 1           ; 1=Binomial filter (default), 2=MEX wavelet shifted, 3=MEX wavelet
filter-width = 9 	      ; filter width 
filter-shift = 0.01       ; Optional shift constant
filter-delta = 0.3        ; grid spacing for binomial filter, typically 0.6 
; filter-nbin = 30        ; Number of bins for filttering
filter-opt = 0            ; Extra optional flag

; TRAYECTORY ANALYSES
; ==========================================
; frames = first last skip
frames = 1 5000 1


; LIPID GROUPS INFORMATION  
; ========================================== 
l-ngrps = 2     	      ; number of lipid groups, Default=2 
l-grp1 = file 
l-grp2 = file             ; reads data from file l-grp1.dat etc
 
; PROTEINS  
; ========================================== 
p-grps = 4                ; Number of proteins in your system, Default=0  
p-grp1 = P_1A 
p-grp2 = P_2A
p-grp3 = P_3A
p-grp4 = P_4A



; Protein Definitions
; ------------------------------------------
; add the first and final BB residue for each 
; protein in your system.
p1-Calpha = BB	1	678
p2-Calpha = BB	679	1356
p3-Calpha = BB	1357	2034
p4-Calpha = BB	2035	2712


enrich    =   1 
; ensity   =   1
end