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Provide a better means for drilling into underlying data #20

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ppavlidis opened this issue Mar 18, 2022 · 1 comment
Open

Provide a better means for drilling into underlying data #20

ppavlidis opened this issue Mar 18, 2022 · 1 comment
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enhancement New feature or request

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@ppavlidis
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ppavlidis commented Mar 18, 2022

Other than 'gene contributions', users have little way to see exactly why a particular condition comparison comes up, at the moment. It will help to show more information about the underlying experiments (see #18) but can we do more?

A couple of ideas:

  • For each experiment show the specific conditions / factor values that were relevant, rather than just the one that was used in the analysis (which is often an inferred higher-level term). This would help a lot because the terms are often cryptic (e.g. "breast disease vs. mammary cancer")
  • Showing the actual fold-changes/p-values for the genes. We could show this as a distribution per gene or in a heatmap.
  • Allowing drilling down to the expression data, kind of like we do for coexpression. This is unwieldy when there are a lot of experiments involved, but it works easily for 10.
@ppavlidis ppavlidis added the enhancement New feature or request label Mar 18, 2022
@ppavlidis ppavlidis mentioned this issue Mar 18, 2022
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@k8iechen k8iechen self-assigned this Jun 7, 2022
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  • understanding how condition comparisons listed correlate to ontology step settings: why some show up & how far they are

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