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Other than 'gene contributions', users have little way to see exactly why a particular condition comparison comes up, at the moment. It will help to show more information about the underlying experiments (see #18) but can we do more?
A couple of ideas:
For each experiment show the specific conditions / factor values that were relevant, rather than just the one that was used in the analysis (which is often an inferred higher-level term). This would help a lot because the terms are often cryptic (e.g. "breast disease vs. mammary cancer")
Showing the actual fold-changes/p-values for the genes. We could show this as a distribution per gene or in a heatmap.
Allowing drilling down to the expression data, kind of like we do for coexpression. This is unwieldy when there are a lot of experiments involved, but it works easily for 10.
The text was updated successfully, but these errors were encountered:
Other than 'gene contributions', users have little way to see exactly why a particular condition comparison comes up, at the moment. It will help to show more information about the underlying experiments (see #18) but can we do more?
A couple of ideas:
The text was updated successfully, but these errors were encountered: