BetterInputFiles.jl

Provides consistent methods to load in input files, such as .toml, .yaml, and .json files. Also extends the functionality of these files, via pre-processing, and post-processing.

Functionality provided includes:

• Automatically add Metadata to your input
• Automatically include other input files in your input
• Interpolate environmental variables into your input
• Propegate default values throughout your input
• Generically interpolate key's throughout your input

I already use this in many of my projects, including IABCosmo.jl, SALTJacobian.jl, Supernovae.jl, ShockCooling.jl, and Greed.jl (amongst others).

Install

using Pkg
Pkg.add("BetterInputFiles")

Usage

This package provides one main function - setup_input. This function does most of the heavy lifting, pre-processing, loading, and post-processing the input file you give it. An idiomatic way of using this package is as follows:

using BetterInputFiles
using OrderedCollections 
using ArgParse

function get_args()
    s = ArgParseSettings()
    @add_arg_table s begin
        "--verbose", "-v"
            help = "Increase level of logging verbosity"
            action = :store_true
        "input"
            help = "Path to input file"
            required = true
    end
    return parse_args(s)
end

function main()
    args = get_args()
    verbose = args["verbose"]
    input_path = args["input"]
    input = setup_input(input_path, verbose) # <- Have BetterInputFiles prepare your input
    # Run your package with the input file
    run_MyPackage(input)
end

Example

Given the following input file:

[ default ]
example = "Example"

[ key1 ]
a = 1
b = 2
    [ key1.subdict ]
    x = 3
    y = 4
    [[ key1.subdict.subsubdict ]]
        z = 5
    [[ key1.subdict.subsubdict ]]
        z = 6

<include some/other/input.toml>

[ env_var ]
a = <$A>
b = <$B>

[ interpolation ]
a = 1
b = <%a>
c = <%example>

Given the environmental variables A = 1, and B = 1, and some/other/input.toml:

[ key2 ]
a = 1
b = 2

setup_input will:

1. Load in the initial input file
2. Transform it into the input below
3. Ensure all relative paths are expanded to absolute paths, and ensure they exist
4. Setup logging
5. Save the transformed input file to an output directory

Transformed input:

[METADATA]
ORIGINAL = "/path/to/original/input.toml"
DATE = "YYYY-MM-DD"
TIME = "HH:MM:SS"

[GLOBAL]
BASE_PATH = "/path/to/original"
INPUT_PATH = "/path/to/original"
OUTPUT_PATH = "/path/to/original/Output"
LOG_FILE = "/path/to/original/Output/log.txt"
LOGGING = true

[DEFAULT]
EXAMPLE = "Example"

[KEY1]
B = 2
A = 1

    [KEY1.SUBDICT]
    Y = 4
    X = 3

        [[KEY1.SUBDICT.SUBSUBDICT]]
        Z = 5
        [[KEY1.SUBDICT.SUBSUBDICT]]
        Z = 6

[ENV_VAR]
B = 2
A = 1

[INTERPOLATION]
B = 1
A = 1
C = "Example"

As you can see, all key's have been capitalised so users don't need to worry about capitalisation when writing their inputs. Environmental variables have been interpolated, as have local keys and any key in [ DEFAULT ]. Finally, a [ METADATA ] key has been added containing the path to the original file, and the date the script was run, and a [ GLOBAL ] key was added containing information about paths and logging which can be used throughout your script. This functionality will work for both .yaml and .json files as well, and can be extended to other input types.

Much of this behaviour can be modified, including:

• Adding additional keys to the METADATA key
• Changing BASE_PATH (by default, other paths are relative to BASE_PATH, although this can be changed), and OUTPUT_PATH (where all output, including logs, will be placed)
• Add new paths to GLOBAL, which can be absolute, or relative to any other path in GLOBAL
• Changing LOG_FILE, or disabling logging altogether

Finally, if your input file acts like a .toml, .yaml, or .json file, but has a different extension, you can force BetterInputFiles to treat your input file as one of the implemented file types via

input = setup_input("/path/to/input.example", verbose, "toml")