refactor NPLinker class #256
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This was referenced Jun 10, 2024
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gcroci2
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Jun 14, 2024
| - MolecularFamily | ||
| self, objects: Sequence[BGC], scoring_method: str, **scoring_params | ||
| ) -> LinkGraph: ... | ||
| @overload |
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I didn't know this decorator. Very handy!
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- remove unused method `scoring_method` - refactor the method `get_links`
- simplify the `conftest.py` - remove unused functions - add tests for `get_link`
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This was referenced Jun 17, 2024
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Finally, it's ready to refactor the main class
NPLinker.It's better to review in the order of commits.
It's necessary to add some new methods to this class, e.g. pickling data, but they will be added in next PRs. When pickling data is done, then it's ready to start the dev of webapp.