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NPLinker · Nov 18, 2024 · e7bbdaf · e7bbdaf
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diff --git a/dev/404.html b/dev/404.html
@@ -13,7 +13,7 @@
 
 
 
-      <link rel="icon" href="/nplinker/latest/favicon.png">
+      <link rel="icon" href="/nplinker/latest/images/NPLinker_icon_black.svg">
       <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.25">
 
 
@@ -89,8 +89,7 @@
   <nav class="md-header__inner md-grid" aria-label="Header">
     <a href="/nplinker/latest/." title="NPLinker" class="md-header__button md-logo" aria-label="NPLinker" data-md-component="logo">
 
-
-  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 14.27 10.64 13A11.242 11.242 0 0 0 5 10.18v6.95c2.61.34 5 1.34 7 2.82 2-1.48 4.39-2.48 7-2.82v-6.95c-2.16.39-4.09 1.39-5.64 2.82M19 8.15c.65-.1 1.32-.15 2-.15v11c-3.5 0-6.64 1.35-9 3.54C9.64 20.35 6.5 19 3 19V8c.68 0 1.35.05 2 .15 2.69.41 5.1 1.63 7 3.39 1.9-1.76 4.31-2.98 7-3.39M12 6c.27 0 .5-.1.71-.29.19-.21.29-.44.29-.71s-.1-.5-.29-.71C12.5 4.11 12.27 4 12 4s-.5.11-.71.29c-.18.21-.29.45-.29.71s.11.5.29.71c.21.19.45.29.71.29m2.12 1.12a2.997 2.997 0 1 1-4.24-4.24 2.997 2.997 0 1 1 4.24 4.24Z"/></svg>
+  <img src="/nplinker/latest/images/NPLinker_icon_white.svg" alt="logo">
 
     </a>
     <label class="md-header__button md-icon" for="__drawer">
@@ -316,8 +315,7 @@
   <label class="md-nav__title" for="__drawer">
     <a href="/nplinker/latest/." title="NPLinker" class="md-nav__button md-logo" aria-label="NPLinker" data-md-component="logo">
 
-
-  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 14.27 10.64 13A11.242 11.242 0 0 0 5 10.18v6.95c2.61.34 5 1.34 7 2.82 2-1.48 4.39-2.48 7-2.82v-6.95c-2.16.39-4.09 1.39-5.64 2.82M19 8.15c.65-.1 1.32-.15 2-.15v11c-3.5 0-6.64 1.35-9 3.54C9.64 20.35 6.5 19 3 19V8c.68 0 1.35.05 2 .15 2.69.41 5.1 1.63 7 3.39 1.9-1.76 4.31-2.98 7-3.39M12 6c.27 0 .5-.1.71-.29.19-.21.29-.44.29-.71s-.1-.5-.29-.71C12.5 4.11 12.27 4 12 4s-.5.11-.71.29c-.18.21-.29.45-.29.71s.11.5.29.71c.21.19.45.29.71.29m2.12 1.12a2.997 2.997 0 1 1-4.24-4.24 2.997 2.997 0 1 1 4.24 4.24Z"/></svg>
+  <img src="/nplinker/latest/images/NPLinker_icon_white.svg" alt="logo">
 
     </a>
     NPLinker
@@ -1492,6 +1490,8 @@ <h1>404 - Not found</h1>
 
       <script src="/nplinker/latest/assets/javascripts/bundle.081f42fc.min.js"></script>
 
+        <script src="/nplinker/latest/scripts/extra.js"></script>
+
 
   </body>
 </html>
diff --git a/dev/api/antismash/index.html b/dev/api/antismash/index.html
@@ -19,7 +19,7 @@
         <link rel="next" href="../bigscape/">
 
 
-      <link rel="icon" href="../../favicon.png">
+      <link rel="icon" href="../../images/NPLinker_icon_black.svg">
       <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.25">
 
 
@@ -100,8 +100,7 @@
   <nav class="md-header__inner md-grid" aria-label="Header">
     <a href="../.." title="NPLinker" class="md-header__button md-logo" aria-label="NPLinker" data-md-component="logo">
 
-
-  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 14.27 10.64 13A11.242 11.242 0 0 0 5 10.18v6.95c2.61.34 5 1.34 7 2.82 2-1.48 4.39-2.48 7-2.82v-6.95c-2.16.39-4.09 1.39-5.64 2.82M19 8.15c.65-.1 1.32-.15 2-.15v11c-3.5 0-6.64 1.35-9 3.54C9.64 20.35 6.5 19 3 19V8c.68 0 1.35.05 2 .15 2.69.41 5.1 1.63 7 3.39 1.9-1.76 4.31-2.98 7-3.39M12 6c.27 0 .5-.1.71-.29.19-.21.29-.44.29-.71s-.1-.5-.29-.71C12.5 4.11 12.27 4 12 4s-.5.11-.71.29c-.18.21-.29.45-.29.71s.11.5.29.71c.21.19.45.29.71.29m2.12 1.12a2.997 2.997 0 1 1-4.24-4.24 2.997 2.997 0 1 1 4.24 4.24Z"/></svg>
+  <img src="../../images/NPLinker_icon_white.svg" alt="logo">
 
     </a>
     <label class="md-header__button md-icon" for="__drawer">
@@ -331,8 +330,7 @@
   <label class="md-nav__title" for="__drawer">
     <a href="../.." title="NPLinker" class="md-nav__button md-logo" aria-label="NPLinker" data-md-component="logo">
 
-
-  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 14.27 10.64 13A11.242 11.242 0 0 0 5 10.18v6.95c2.61.34 5 1.34 7 2.82 2-1.48 4.39-2.48 7-2.82v-6.95c-2.16.39-4.09 1.39-5.64 2.82M19 8.15c.65-.1 1.32-.15 2-.15v11c-3.5 0-6.64 1.35-9 3.54C9.64 20.35 6.5 19 3 19V8c.68 0 1.35.05 2 .15 2.69.41 5.1 1.63 7 3.39 1.9-1.76 4.31-2.98 7-3.39M12 6c.27 0 .5-.1.71-.29.19-.21.29-.44.29-.71s-.1-.5-.29-.71C12.5 4.11 12.27 4 12 4s-.5.11-.71.29c-.18.21-.29.45-.29.71s.11.5.29.71c.21.19.45.29.71.29m2.12 1.12a2.997 2.997 0 1 1-4.24-4.24 2.997 2.997 0 1 1 4.24 4.24Z"/></svg>
+  <img src="../../images/NPLinker_icon_white.svg" alt="logo">
 
     </a>
     NPLinker
@@ -3408,6 +3406,8 @@ <h3 id="nplinker.genomics.antismash.podp_download_and_extract_antismash_data" cl
 
       <script src="../../assets/javascripts/bundle.081f42fc.min.js"></script>
 
+        <script src="../../scripts/extra.js"></script>
+
 
   </body>
 </html>
diff --git a/dev/api/arranger/index.html b/dev/api/arranger/index.html
@@ -19,7 +19,7 @@
         <link rel="next" href="../loader/">
 
 
-      <link rel="icon" href="../../favicon.png">
+      <link rel="icon" href="../../images/NPLinker_icon_black.svg">
       <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.25">
 
 
@@ -100,8 +100,7 @@
   <nav class="md-header__inner md-grid" aria-label="Header">
     <a href="../.." title="NPLinker" class="md-header__button md-logo" aria-label="NPLinker" data-md-component="logo">
 
-
-  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 14.27 10.64 13A11.242 11.242 0 0 0 5 10.18v6.95c2.61.34 5 1.34 7 2.82 2-1.48 4.39-2.48 7-2.82v-6.95c-2.16.39-4.09 1.39-5.64 2.82M19 8.15c.65-.1 1.32-.15 2-.15v11c-3.5 0-6.64 1.35-9 3.54C9.64 20.35 6.5 19 3 19V8c.68 0 1.35.05 2 .15 2.69.41 5.1 1.63 7 3.39 1.9-1.76 4.31-2.98 7-3.39M12 6c.27 0 .5-.1.71-.29.19-.21.29-.44.29-.71s-.1-.5-.29-.71C12.5 4.11 12.27 4 12 4s-.5.11-.71.29c-.18.21-.29.45-.29.71s.11.5.29.71c.21.19.45.29.71.29m2.12 1.12a2.997 2.997 0 1 1-4.24-4.24 2.997 2.997 0 1 1 4.24 4.24Z"/></svg>
+  <img src="../../images/NPLinker_icon_white.svg" alt="logo">
 
     </a>
     <label class="md-header__button md-icon" for="__drawer">
@@ -331,8 +330,7 @@
   <label class="md-nav__title" for="__drawer">
     <a href="../.." title="NPLinker" class="md-nav__button md-logo" aria-label="NPLinker" data-md-component="logo">
 
-
-  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 14.27 10.64 13A11.242 11.242 0 0 0 5 10.18v6.95c2.61.34 5 1.34 7 2.82 2-1.48 4.39-2.48 7-2.82v-6.95c-2.16.39-4.09 1.39-5.64 2.82M19 8.15c.65-.1 1.32-.15 2-.15v11c-3.5 0-6.64 1.35-9 3.54C9.64 20.35 6.5 19 3 19V8c.68 0 1.35.05 2 .15 2.69.41 5.1 1.63 7 3.39 1.9-1.76 4.31-2.98 7-3.39M12 6c.27 0 .5-.1.71-.29.19-.21.29-.44.29-.71s-.1-.5-.29-.71C12.5 4.11 12.27 4 12 4s-.5.11-.71.29c-.18.21-.29.45-.29.71s.11.5.29.71c.21.19.45.29.71.29m2.12 1.12a2.997 2.997 0 1 1-4.24-4.24 2.997 2.997 0 1 1 4.24 4.24Z"/></svg>
+  <img src="../../images/NPLinker_icon_white.svg" alt="logo">
 
     </a>
     NPLinker
@@ -3467,6 +3465,8 @@ <h3 id="nplinker.arranger.validate_bigscape" class="doc doc-heading">
 
       <script src="../../assets/javascripts/bundle.081f42fc.min.js"></script>
 
+        <script src="../../scripts/extra.js"></script>
+
 
   </body>
 </html>
diff --git a/dev/api/bigscape/index.html b/dev/api/bigscape/index.html
@@ -19,7 +19,7 @@
         <link rel="next" href="../genomics_utils/">
 
 
-      <link rel="icon" href="../../favicon.png">
+      <link rel="icon" href="../../images/NPLinker_icon_black.svg">
       <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.25">
 
 
@@ -100,8 +100,7 @@
   <nav class="md-header__inner md-grid" aria-label="Header">
     <a href="../.." title="NPLinker" class="md-header__button md-logo" aria-label="NPLinker" data-md-component="logo">
 
-
-  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 14.27 10.64 13A11.242 11.242 0 0 0 5 10.18v6.95c2.61.34 5 1.34 7 2.82 2-1.48 4.39-2.48 7-2.82v-6.95c-2.16.39-4.09 1.39-5.64 2.82M19 8.15c.65-.1 1.32-.15 2-.15v11c-3.5 0-6.64 1.35-9 3.54C9.64 20.35 6.5 19 3 19V8c.68 0 1.35.05 2 .15 2.69.41 5.1 1.63 7 3.39 1.9-1.76 4.31-2.98 7-3.39M12 6c.27 0 .5-.1.71-.29.19-.21.29-.44.29-.71s-.1-.5-.29-.71C12.5 4.11 12.27 4 12 4s-.5.11-.71.29c-.18.21-.29.45-.29.71s.11.5.29.71c.21.19.45.29.71.29m2.12 1.12a2.997 2.997 0 1 1-4.24-4.24 2.997 2.997 0 1 1 4.24 4.24Z"/></svg>
+  <img src="../../images/NPLinker_icon_white.svg" alt="logo">
 
     </a>
     <label class="md-header__button md-icon" for="__drawer">
@@ -331,8 +330,7 @@
   <label class="md-nav__title" for="__drawer">
     <a href="../.." title="NPLinker" class="md-nav__button md-logo" aria-label="NPLinker" data-md-component="logo">
 
-
-  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 14.27 10.64 13A11.242 11.242 0 0 0 5 10.18v6.95c2.61.34 5 1.34 7 2.82 2-1.48 4.39-2.48 7-2.82v-6.95c-2.16.39-4.09 1.39-5.64 2.82M19 8.15c.65-.1 1.32-.15 2-.15v11c-3.5 0-6.64 1.35-9 3.54C9.64 20.35 6.5 19 3 19V8c.68 0 1.35.05 2 .15 2.69.41 5.1 1.63 7 3.39 1.9-1.76 4.31-2.98 7-3.39M12 6c.27 0 .5-.1.71-.29.19-.21.29-.44.29-.71s-.1-.5-.29-.71C12.5 4.11 12.27 4 12 4s-.5.11-.71.29c-.18.21-.29.45-.29.71s.11.5.29.71c.21.19.45.29.71.29m2.12 1.12a2.997 2.997 0 1 1-4.24-4.24 2.997 2.997 0 1 1 4.24 4.24Z"/></svg>
+  <img src="../../images/NPLinker_icon_white.svg" alt="logo">
 
     </a>
     NPLinker
@@ -2559,6 +2557,8 @@ <h3 id="nplinker.genomics.bigscape.run_bigscape" class="doc doc-heading">
 
       <script src="../../assets/javascripts/bundle.081f42fc.min.js"></script>
 
+        <script src="../../scripts/extra.js"></script>
+
 
   </body>
 </html>
diff --git a/dev/api/genomics/index.html b/dev/api/genomics/index.html
@@ -19,7 +19,7 @@
         <link rel="next" href="../mibig/">
 
 
-      <link rel="icon" href="../../favicon.png">
+      <link rel="icon" href="../../images/NPLinker_icon_black.svg">
       <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.25">
 
 
@@ -100,8 +100,7 @@
   <nav class="md-header__inner md-grid" aria-label="Header">
     <a href="../.." title="NPLinker" class="md-header__button md-logo" aria-label="NPLinker" data-md-component="logo">
 
-
-  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 14.27 10.64 13A11.242 11.242 0 0 0 5 10.18v6.95c2.61.34 5 1.34 7 2.82 2-1.48 4.39-2.48 7-2.82v-6.95c-2.16.39-4.09 1.39-5.64 2.82M19 8.15c.65-.1 1.32-.15 2-.15v11c-3.5 0-6.64 1.35-9 3.54C9.64 20.35 6.5 19 3 19V8c.68 0 1.35.05 2 .15 2.69.41 5.1 1.63 7 3.39 1.9-1.76 4.31-2.98 7-3.39M12 6c.27 0 .5-.1.71-.29.19-.21.29-.44.29-.71s-.1-.5-.29-.71C12.5 4.11 12.27 4 12 4s-.5.11-.71.29c-.18.21-.29.45-.29.71s.11.5.29.71c.21.19.45.29.71.29m2.12 1.12a2.997 2.997 0 1 1-4.24-4.24 2.997 2.997 0 1 1 4.24 4.24Z"/></svg>
+  <img src="../../images/NPLinker_icon_white.svg" alt="logo">
 
     </a>
     <label class="md-header__button md-icon" for="__drawer">
@@ -331,8 +330,7 @@
   <label class="md-nav__title" for="__drawer">
     <a href="../.." title="NPLinker" class="md-nav__button md-logo" aria-label="NPLinker" data-md-component="logo">
 
-
-  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 14.27 10.64 13A11.242 11.242 0 0 0 5 10.18v6.95c2.61.34 5 1.34 7 2.82 2-1.48 4.39-2.48 7-2.82v-6.95c-2.16.39-4.09 1.39-5.64 2.82M19 8.15c.65-.1 1.32-.15 2-.15v11c-3.5 0-6.64 1.35-9 3.54C9.64 20.35 6.5 19 3 19V8c.68 0 1.35.05 2 .15 2.69.41 5.1 1.63 7 3.39 1.9-1.76 4.31-2.98 7-3.39M12 6c.27 0 .5-.1.71-.29.19-.21.29-.44.29-.71s-.1-.5-.29-.71C12.5 4.11 12.27 4 12 4s-.5.11-.71.29c-.18.21-.29.45-.29.71s.11.5.29.71c.21.19.45.29.71.29m2.12 1.12a2.997 2.997 0 1 1-4.24-4.24 2.997 2.997 0 1 1 4.24 4.24Z"/></svg>
+  <img src="../../images/NPLinker_icon_white.svg" alt="logo">
 
     </a>
     NPLinker
@@ -3806,6 +3804,8 @@ <h4 id="nplinker.genomics.GCF.is_singleton" class="doc doc-heading">
 
       <script src="../../assets/javascripts/bundle.081f42fc.min.js"></script>
 
+        <script src="../../scripts/extra.js"></script>
+
 
   </body>
 </html>
diff --git a/dev/api/genomics_abc/index.html b/dev/api/genomics_abc/index.html
@@ -19,7 +19,7 @@
         <link rel="next" href="../genomics/">
 
 
-      <link rel="icon" href="../../favicon.png">
+      <link rel="icon" href="../../images/NPLinker_icon_black.svg">
       <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.25">
 
 
@@ -100,8 +100,7 @@
   <nav class="md-header__inner md-grid" aria-label="Header">
     <a href="../.." title="NPLinker" class="md-header__button md-logo" aria-label="NPLinker" data-md-component="logo">
 
-
-  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 14.27 10.64 13A11.242 11.242 0 0 0 5 10.18v6.95c2.61.34 5 1.34 7 2.82 2-1.48 4.39-2.48 7-2.82v-6.95c-2.16.39-4.09 1.39-5.64 2.82M19 8.15c.65-.1 1.32-.15 2-.15v11c-3.5 0-6.64 1.35-9 3.54C9.64 20.35 6.5 19 3 19V8c.68 0 1.35.05 2 .15 2.69.41 5.1 1.63 7 3.39 1.9-1.76 4.31-2.98 7-3.39M12 6c.27 0 .5-.1.71-.29.19-.21.29-.44.29-.71s-.1-.5-.29-.71C12.5 4.11 12.27 4 12 4s-.5.11-.71.29c-.18.21-.29.45-.29.71s.11.5.29.71c.21.19.45.29.71.29m2.12 1.12a2.997 2.997 0 1 1-4.24-4.24 2.997 2.997 0 1 1 4.24 4.24Z"/></svg>
+  <img src="../../images/NPLinker_icon_white.svg" alt="logo">
 
     </a>
     <label class="md-header__button md-icon" for="__drawer">
@@ -331,8 +330,7 @@
   <label class="md-nav__title" for="__drawer">
     <a href="../.." title="NPLinker" class="md-nav__button md-logo" aria-label="NPLinker" data-md-component="logo">
 
-
-  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 14.27 10.64 13A11.242 11.242 0 0 0 5 10.18v6.95c2.61.34 5 1.34 7 2.82 2-1.48 4.39-2.48 7-2.82v-6.95c-2.16.39-4.09 1.39-5.64 2.82M19 8.15c.65-.1 1.32-.15 2-.15v11c-3.5 0-6.64 1.35-9 3.54C9.64 20.35 6.5 19 3 19V8c.68 0 1.35.05 2 .15 2.69.41 5.1 1.63 7 3.39 1.9-1.76 4.31-2.98 7-3.39M12 6c.27 0 .5-.1.71-.29.19-.21.29-.44.29-.71s-.1-.5-.29-.71C12.5 4.11 12.27 4 12 4s-.5.11-.71.29c-.18.21-.29.45-.29.71s.11.5.29.71c.21.19.45.29.71.29m2.12 1.12a2.997 2.997 0 1 1-4.24-4.24 2.997 2.997 0 1 1 4.24 4.24Z"/></svg>
+  <img src="../../images/NPLinker_icon_white.svg" alt="logo">
 
     </a>
     NPLinker
@@ -2112,6 +2110,8 @@ <h4 id="nplinker.genomics.abc.GCFLoaderBase.get_gcfs" class="doc doc-heading">
 
       <script src="../../assets/javascripts/bundle.081f42fc.min.js"></script>
 
+        <script src="../../scripts/extra.js"></script>
+
 
   </body>
 </html>
diff --git a/dev/api/genomics_utils/index.html b/dev/api/genomics_utils/index.html
@@ -19,7 +19,7 @@
         <link rel="next" href="../metabolomics_abc/">
 
 
-      <link rel="icon" href="../../favicon.png">
+      <link rel="icon" href="../../images/NPLinker_icon_black.svg">
       <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.25">
 
 
@@ -100,8 +100,7 @@
   <nav class="md-header__inner md-grid" aria-label="Header">
     <a href="../.." title="NPLinker" class="md-header__button md-logo" aria-label="NPLinker" data-md-component="logo">
 
-
-  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 14.27 10.64 13A11.242 11.242 0 0 0 5 10.18v6.95c2.61.34 5 1.34 7 2.82 2-1.48 4.39-2.48 7-2.82v-6.95c-2.16.39-4.09 1.39-5.64 2.82M19 8.15c.65-.1 1.32-.15 2-.15v11c-3.5 0-6.64 1.35-9 3.54C9.64 20.35 6.5 19 3 19V8c.68 0 1.35.05 2 .15 2.69.41 5.1 1.63 7 3.39 1.9-1.76 4.31-2.98 7-3.39M12 6c.27 0 .5-.1.71-.29.19-.21.29-.44.29-.71s-.1-.5-.29-.71C12.5 4.11 12.27 4 12 4s-.5.11-.71.29c-.18.21-.29.45-.29.71s.11.5.29.71c.21.19.45.29.71.29m2.12 1.12a2.997 2.997 0 1 1-4.24-4.24 2.997 2.997 0 1 1 4.24 4.24Z"/></svg>
+  <img src="../../images/NPLinker_icon_white.svg" alt="logo">
 
     </a>
     <label class="md-header__button md-icon" for="__drawer">
@@ -331,8 +330,7 @@
   <label class="md-nav__title" for="__drawer">
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+        <script src="../../scripts/extra.js"></script>
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diff --git a/dev/api/gnps/index.html b/dev/api/gnps/index.html
@@ -19,7 +19,7 @@
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