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merge DataLinks to MetcalfScoring class (#249)
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* remove deprecated code

* move utils.py to scoring level

* remove linking subpackage

- remove data_links.py

* Delete test_data_links.py

* merge DataLinks to MetcalfScoring

- merge DataLinks methods to MetcalfScoring and utils
- only keep occurrence variables in MetcalfScoring
- rename occurrence to presence

* remove datalinks fixture

* remove unused utils and their tests

* Create test_utils.py

* skip failed tests that will be fixed in following PRs
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CunliangGeng authored Jun 10, 2024
1 parent 276aff6 commit 5ba9e31
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Showing 14 changed files with 268 additions and 1,323 deletions.
43 changes: 0 additions & 43 deletions src/nplinker/scoring/deprecated.py

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7 changes: 0 additions & 7 deletions src/nplinker/scoring/linking/__init__.py

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269 changes: 0 additions & 269 deletions src/nplinker/scoring/linking/data_links.py

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