Precursor m/z value fix #695
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build and test Python package | |
| permissions: | |
| contents: read | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| paths: | |
| - bin/** | |
| - src/** | |
| - tests/** | |
| - setup.py | |
| - .github/workflows/build.yml | |
| pull_request: | |
| paths: | |
| - bin/** | |
| - src/** | |
| - tests/** | |
| - setup.py | |
| - .github/workflows/build.yml | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| - ready_for_review | |
| jobs: | |
| smoke_test: | |
| name: Smoke test on ubuntu for python 3.10 | |
| runs-on: ubuntu-latest | |
| if: github.event.pull_request.draft == false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.10' | |
| - name: Python info | |
| shell: bash -l {0} | |
| run: | | |
| which python3 | |
| python3 --version | |
| - name: Upgrade pip and install dependencies | |
| run: | | |
| python3 -m pip install --upgrade pip setuptools | |
| pip install build pytest wheel pytest-xdist | |
| - name: Build the package | |
| run: python -m build | |
| - name: Install nplinker | |
| run: | | |
| pip install $(ls dist/nplinker*.whl) | |
| install-nplinker-deps --run-on-github | |
| - name: Run unit tests | |
| run: pytest -v | |
| build: | |
| needs: smoke_test | |
| name: Build for (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| python-version: ['3.9', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Python info | |
| shell: bash -l {0} | |
| run: | | |
| which python3 | |
| python3 --version | |
| - name: Upgrade pip and install dependencies | |
| run: | | |
| python3 -m pip install --upgrade pip setuptools | |
| pip install build pytest wheel pytest-xdist | |
| - name: Build the package | |
| run: python -m build | |
| - name: Install nplinker | |
| run: | | |
| pip install $(ls dist/nplinker*.whl) | |
| install-nplinker-deps --run-on-github | |
| - name: Run unit tests | |
| run: pytest -v |