Bioimage Analysis Training Resource

This project is intended to collect together various resources that can be useful when planning/delivering training in image analysis.

About

The material in this repository can be flexibly used in many ways.

Some guidance and tips can be found in TEACHING_TIPS

Detailed guidance for contributing can be found in CONTRIBUTING.md.

Current repository structure:

template things:
- _includes/: among other things, contains folders holding activities and exercises specific to different platforms for image analysis, for each module
- _layouts/, _sass/, Gemfile, _config.yml, Makefile, assets, .gitignore: material for building the webpages associated with this repository
content things:
- _modules/: all of the individual module pages are collected here
- _extras/: additional pages to complement the modules
- figures/: a collection of illustrations/diagrams used to help explain the concepts in each module.
- image_data/: image files used in activities and exercises
- module_templates/: template file(s) as an example for module pages
- src/: code for image analysis
- workshops/: information on workshops taught using this material
- example_images.md: intended to contain links to images that would make good examples when teaching
- index.md: content for the website landing page
other pages (from Carpentries lesson template):
- aio.md: an 'all-in-one' version of the material, combining all the modules into a single page
- reference.md: currently blank but could be populated with a glossary/other reference material
- setup.md: a page for setup instructions - currently blank but could be populated with instructions for relevant technical setup/installation