neuroglancer-python

Installation

git clone https://github.com/MetaCell/neuroglancer-python
cd neuroglancer-python
pip install -e .

git clone -b develop https://github.com/MetaCell/neuroglancer/tree/develop
cd neuroglancer
npm i
npm run build-python
pip install .

Usage

See examples folder.

Note

While PRs have not yet been merged, you can install the neuroglancer Python package from the forked repo of neuroglancer at https://github.com/MetaCell/neuroglancer/tree/develop. See the installation instructions above.

Regression tests

cd tests
npm install
npm run test

You can update constants.js to point to some different data.

Running individual tests

npm install jest --global
cd tests
jest MATCH --config=jest.config.js

where MATCH is a substring of the test name.