diff --git a/alphaviz/gui.py b/alphaviz/gui.py index 3b9a8e8..fa75f1c 100644 --- a/alphaviz/gui.py +++ b/alphaviz/gui.py @@ -1066,7 +1066,7 @@ def display_chromatogram(self, *args): self.data.raw_data, self.colorscale_qualitative.value, ) - chrom_widget = pn.Pane( + chrom_widget = pn.pane.panel( chromatograms, config=update_config('Chromatograms'), sizing_mode='stretch_width', @@ -1230,7 +1230,7 @@ def run_after_protein_selection(self, *args): self.curr_protein_ids = prot_id break - self.layout[6] = pn.Pane( + self.layout[6] = pn.pane.panel( self.protein_coverage_plot, config=update_config(f"{self.gene_name}_coverage_plot"), align='center', diff --git a/release/pyinstaller/alphaviz.spec b/release/pyinstaller/alphaviz.spec index f3b19f7..c88ed1b 100644 --- a/release/pyinstaller/alphaviz.spec +++ b/release/pyinstaller/alphaviz.spec @@ -97,6 +97,8 @@ for _pkg in ["python","accelerate"]: for _pkg in pkgs_to_check_at_runtime: datas += copy_metadata(_pkg) +datas += copy_metadata('datashader') + a = Analysis( [script_name], pathex=[location], diff --git a/requirements/requirements.txt b/requirements/requirements.txt index aa1a0ad..bcfe222 100644 --- a/requirements/requirements.txt +++ b/requirements/requirements.txt @@ -3,9 +3,6 @@ peptdeep alphabase alpharaw -holoviews xarray -dask multipledispatch -plotly -datashader \ No newline at end of file +plotly \ No newline at end of file diff --git a/requirements/requirements_development.txt b/requirements/requirements_development.txt index f33e0db..80d6662 100644 --- a/requirements/requirements_development.txt +++ b/requirements/requirements_development.txt @@ -1,18 +1,14 @@ jupyter==1.0.0 jupyter_contrib_nbextensions==0.5.1 -pyinstaller autodocsumm==0.2.6 sphinx-rtd-theme==0.5.2 twine==3.4.1 -bumpversion pipdeptree==2.1.0 ipykernel==6.4.0 +pytest==6.2.5 tqdm psutil -pytest==6.2.5 +bumpversion +pyinstaller pywin32; sys_platform=='win32' - -alphatims -peptdeep -alphabase diff --git a/requirements/requirements_gui.txt b/requirements/requirements_gui.txt index d549aca..e197428 100644 --- a/requirements/requirements_gui.txt +++ b/requirements/requirements_gui.txt @@ -1,15 +1,12 @@ bokeh==2.4.2 matplotlib==3.4.3 +datashader==0.13.0 holoviews==1.14.8 panel==0.12.4 -pyteomics +pyteomics==4.5 plotly==5.8.0 beautifulsoup4==4.10.0 requests==2.27.1 #selenium #chromedriver-binary jinja2==3.0.2 - -alphatims -peptdeep -alphabase