0000 Additional issues

[Batwan01]

Hello "nnUNet_plan_and_preprocess -t 1 --verify_dataset_integrity" An error occurred while using this command.

dataset.json

rep

terminal

Both json and rep are in the 0000_0000 format, but when you enter the nnUNet_plan_and_preprocess -t 1 --verify_dataset_integrity command, a problem occurs because it is looking for a file with 0000_0000 with 0000 added.

AssertionError: some image files are missing for case case_0000_0000. Expected files:

['/data/ephemeral/home/nnUNet_raw_data_base/nnUNet_raw_data/Task001_HandBone/imagesTr/case_0000_0000_0000.nii.gz']

[Batwan01]

#expected_image_files = [join(folder, "imagesTr", c + "_%04.0d.nii.gz" % i) for i in range(num_modalities)]

Expect_image_files = [join(folder, "imagesTr", c + ".nii.gz") for i in range(num_modalities)]

I changed it and it works!

[Batwan01]

utils.py

for mod in range(num_modalities):
#cur_pat.append(join(base_folder_splitted, "imagesTr", tr['image'].split("/")[-1][:-7] +
# "_%04.0d.nii.gz" % mod))
cur_pat.append(join(base_folder_splitted, "imagesTr", tr['image'].split("/")[-1][:-7] + ".nii.gz"))

After modifying the contents of _%04.0d.nii.gz, even the train worked properly.

I wonder what part I made a mistake in